Author Archives: curiouscat

The Nobel Prize in Chemistry 2008

The Nobel Prize in Chemistry 2008 is evenly shared by Osamu Shimomura, Boston University Medical School, USA; Martin Chalfie, Columbia University, New York, USA and Roger Y. Tsien, University of California, San Diego, USA for discovery and work with glowing green fluorescent protein.

The remarkable brightly glowing green fluorescent protein, GFP, was first observed in the beautiful jellyfish, Aequorea victoria in 1962. Since then, this protein has become one of the most important tools used in contemporary bioscience. With the aid of GFP, researchers have developed ways to watch processes that were previously invisible, such as the development of nerve cells in the brain or how cancer cells spread.

Tens of thousands of different proteins reside in a living organism, controlling important chemical processes in minute detail. If this protein machinery malfunctions, illness and disease often follow. That is why it has been imperative for bioscience to map the role of different proteins in the body.

This year’s Nobel Prize in Chemistry rewards the initial discovery of GFP and a series of important developments which have led to its use as a tagging tool in bioscience. By using DNA technology, researchers can now connect GFP to other interesting, but otherwise invisible, proteins. This glowing marker allows them to watch the movements, positions and interactions of the tagged proteins.

Researchers can also follow the fate of various cells with the help of GFP: nerve cell damage during Alzheimer’s disease or how insulin-producing beta cells are created in the pancreas of a growing embryo. In one spectacular experiment, researchers succeeded in tagging different nerve cells in the brain of a mouse with a kaleidoscope of colors.


Osamu Shimomura
, a Japanese citizen, was born 1928 in Kyoto, Japan. He received his Ph.D. in organic chemistry 1960 from Nagoya University, Japan. first isolated GFP from the jellyfish Aequorea victoria, which drifts with the currents off the west coast of North America. He discovered that this protein glowed bright green under ultraviolet light.

Martin Chalfie demonstrated the value of GFP as a luminous genetic tag for various biological phenomena. In one of his first experiments, he coloured six individual cells in the transparent roundworm Caenorhabditis elegans with the aid of GFP.

Roger Y. Tsien contributed to our general understanding of how GFP fluoresces. He also extended the colour palette beyond green allowing researchers to give various proteins and cells different colours. This enables scientists to follow several different biological processes at the same time.

Related: 2007 Nobel Prize in ChemistryNobel Laureate Initiates Symposia for Student ScientistsNobel Prize in Chemistry (2006)Webcasts by Chemistry and Physics Nobel Laureates

Stanford Gets $75 Million for Stem Cell Center

Stanford gets $75 million for stem cell center

With today’s announcement, Lokey more than doubles his commitment. School officials say he is the lead contributor for a $200 million stem cell research building that will break ground Oct. 27 and be finished in the summer of 2010. In a statement released by the medical school, Lokey said stem cells would be “as significant as the silicon chip that created Silicon Valley,” producing treatments for disease and saving lives.

He said he was driven to fund research after President Bush, in August 2001, forbid the use of federal funds for stem cell research that involved the destruction of human embryos. “It’s very narrow-minded,” Lokey said of the position. “This is about lives being saved.”

Some 350 scientists will work in the 200,000-square-foot Lorry I. Lokey Stem Cell Research Building, the school said. The center is also getting a $43.6 million grant from the California Institute for Regenerative Medicine. The institute, the state’s $3 billion stem cell funding unit, was created by a 2004 state initiative from research advocates opposed to Bush’s restrictions.

Related: Chinese Stem Cell TherapiesScientists Cure Mice Of Sickle Cell Using Stem Cell TechniqueFunding Medical Researchpost on funding science

Why is it Colder at Higher Elevations?

John Hunter at Hurricane Ridge in Olympic National Park

I know it is colder at higher elevations (there is snow on the top of mountains when no snow is left on the bottom). When I was hiking this summer in Colorado and it started snowing I thought about why it was colder in higher elevations. My guess was that it was mainly due to lower air pressure and being higher up in the atmosphere where air was cooler than is was closer to sea level.

So I did some research online and the main explanations seem to be that at higher elevations the air pressure is lower (molecules and atoms under less pressure move more slowly which means the temperature is less).

Hot air does rise, but the amount of hot air is minor compared to the existing cold air in the atmosphere. So when hot air rises from the ground it is cooled down before getting far off the earth’s surface. And as it rises the pressure decreases, which cools it down.

Mountain Environments report, United Nations Environment Programme:

Air temperature on average decreases by about 6.5° C for every 1,000 m increase in altitude; in mid latitudes this is equivalent to moving poleward about 800 km. The dry dust-free air at altitude retains little heat energy, leading to marked extremes of temperature between day and night.

Photo of John Hunter at Hurricane Ridge in Olympic National Park.

Related: Why is the air cooler at higher altitudes?Why is the Sky Blue?scientific explanations for what we experienceFlint and Steel: What Causes the Sparks?Mount Rainier National Park PhotosLow air pressure decreases temps at high elevation
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Astronomers Find a Planet Denser Than Lead

Astronomers find a planet denser than lead

Meet the planet COROT-exo-3b. It orbits a star slightly larger, hotter, and brighter than the Sun. The star is not an unusual one in any way, but the planet is definitely weird: it orbits the star in just over 4 days, which is pretty close in, though not a record breaker in and of itself. What’s bizarre is that it has about the same diameter of Jupiter, but has 21.6 times Jupiter’s mass. That makes it denser than lead.

This planet is challenging to models. How did it form? It most likely formed farther out from the star — gravitational influences make it hard for a large planet to form close to a star — and then gradually moved in.

It was discovered by COROT, an orbiting European Space Agency mission designed to look for stars that dip in brightness as an orbiting planet passes in front of them. That gives the size of the planet (the amount the light dims is proportional to the size of the planet).

As a planet (the alternative is classifying it as a brown dwarf – a failed star, not a planet), COROT-exo-3b would be the densest known planet.

Related: COROT discovery stirs exoplanet classification rethinkPlanet, Less Dense Than Cork, Is DiscoveredHot Ice PlanetPhysics May Need a Revision

$92 Million for Engineering Research Centers

photo of Alex Huabg

NSF Launches Third Generation of Engineering Research Centers with Awards Totaling $92.5 Million. Each of the 5 sites will receive will use $18.5 million over five-years. Each center has international university partners and partners in industry.

The NSF Engineering Research Center for Biorenewable Chemicals (CBiRC), based at Iowa State University, seeks to transform the existing petrochemical-based chemical industry to one based on renewable materials.

The NSF Engineering Research Center for Future Renewable Electric Energy Delivery and Management (FREEDM) Systems, based at North Carolina State University, will conduct research to transform the nation’s power grid into an efficient network that integrates alternative energy generation and new storage methods with existing power sources.

The NSF ERC for Integrated Access Networks (CIAN), based at the University of Arizona, will conduct research to create transformative technologies for optical access networks that offer dramatically improved performance and expanded capabilities.

The NSF ERC for Revolutionizing Metallic Biomaterials, based at North Carolina Agricultural and Technical State University, aims to transform current medial and surgical treatments by creating “smart” implants for craniofacial, dental, orthopedic and cardiovascular interventions.

The NSF Smart Lighting ERC, based at Rensselaer Polytechnic Institute, aims to create new solid-state lighting technologies to enable rapid biological imaging, novel modes of communication, efficient displays and safer transportation.

Photo: Alex Huang will lead direct the research of ways to integrate renewable energy sources into the nation’s power grid at North Carolina State University.

Related: $75 Million for 5 New Engineering Research CentersNSF Awards $50 Million for Collaborative Plant Biology ProjectPresidential Early Career Award for Scientists and Engineersposts related to the United States National Science Foundation

Holographic Television on the Way

Ok, there really isn’t much new since I posted that holographic TV is getting closer. But won’t it be cool when I can have one in my house? And you might need to plan for it in your new house addition 🙂 Also, with the economic news lately a good distraction might be useful – Holographic television to become reality

The reason for renewed optimism in three-dimensional technology is a breakthrough in rewritable and erasable holographic systems made earlier this year by researchers at the University of Arizona.

Dr Nasser Peyghambarian, chair of photonics and lasers at the university’s Optical Sciences department, told CNN that scientists have broken a barrier by making the first updatable three-dimensional displays with memory.

“This is a prerequisite for any type of moving holographic technology. The way it works presently is not suitable for 3-D images,” he said. The researchers produced displays that can be erased and rewritten in a matter of minutes.

According to Peyghambarian, they could be constructed as a screen on the wall (like flat panel displays) that shows 3-D images, with all the image writing lasers behind the wall; or it could be like a horizontal panel on a table with holographic writing apparatus underneath.

Peyghambarian is also optimistic that the technology could reach the market within five to ten years. He said progress towards a final product should be made much more quickly now that a rewriting method had been found.

However, it is fair to say not everyone is as positive about this prospect as Peyghambarian. Justin Lawrence, a lecturer in Electronic Engineering at Bangor University in Wales, told CNN that small steps are being made on technology like 3-D holograms, but, he can’t see it being ready for the market in the next ten years.

I would have to say I am with those that think this might take a bit longer to be in place. But I would be glad to be wrong.

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Nobel Prize in Physiology or Medicine 2008

photos of Harald zur Hausen, Françoise Barré-Sinoussi and Luc Montagnier

The Nobel Prize in Physiology or Medicine for 2008 with one half to Harald zur Hausen for his discovery of “human papilloma viruses causing cervical cancer” and the other half jointly to Françoise Barré-Sinoussi and Luc Montagnier for their discovery of “human immunodeficiency virus.”

Harald zur Hausen went against current dogma and postulated that oncogenic human papilloma virus (HPV) caused cervical cancer, the second most common cancer among women. He realized that HPV-DNA could exist in a non-productive state in the tumours, and should be detectable by specific searches for viral DNA. He found HPV to be a heterogeneous family of viruses. Only some HPV types cause cancer. His discovery has led to characterization of the natural history of HPV infection, an understanding of mechanisms of HPV-induced carcinogenesis and the development of prophylactic vaccines against HPV acquisition.

Françoise Barré-Sinoussi and Luc Montagnier discovered human immunodeficiency virus (HIV). Virus production was identified in lymphocytes from patients with enlarged lymph nodes in early stages of acquired immunodeficiency, and in blood from patients with late stage disease. They characterized this retrovirus as the first known human lentivirus based on its morphological, biochemical and immunological properties. HIV impaired the immune system because of massive virus replication and cell damage to lymphocytes. The discovery was one prerequisite for the current understanding of the biology of the disease and its antiretroviral treatment.

Related: 2007 Nobel Prize in Physiology or Medicine2006 Nobel Prize in Physiology or Medicine

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Milestones on the Voyage to the Bottom of the Sea

Dive! Dive! Dive!

0 FEET: EPIPELAGIC ZONE
Ample sunlight penetrates down to 650 feet, making photosynthesis possible. With abundant plant life (read: food), this zone is the most densely populated with fish.

656 FEET: MESOPELAGIC ZONE
Too deep to support photosynthesis: The fish that survive here are sit-and-wait predators that tend to have large mouths and specialized retinas to increase light reception.

1,640 feet: Maximum diving depth of the blue whale.
1,969 feet: The Deep Sound Channel, a layer in which acoustic signals travel far and fast.
1,969 feet: Maximum diving depth of nuclear-powered attack subs.

3281 FEET: BATHYPELAGIC ZONE
The ocean is dark at this level; the only glow is from bioluminescent animals. There are no living plants, and creatures subsist by eating the debris that falls from the levels above, including dead or dying fish and plankton.

3,281 feet: Maximum diving depth of the sperm whale. To navigate in the darkness, these whales emit high pitched sounds and use echoes to determine the location of prey.
3,937 feet: Maximum diving depth of the leatherback sea turtle.
4,000 feet: The domain of the Pacific sleeper shark, the largest toothed shark ever photographed. It can reach lengths of 28 feet.

5,187 feet: Maximum diving depth of the elephant seal.

13,123 FEET: ABYSSOPELAGIC ZONE
In the pitch-dark of the abyss, there is no light at all, the water temperature is near freezing. Of the few creatures found at these crushing depths, most are blind and have long tentacles – tiny invertebrates such as shrimp, basket stars, and small squids.

19,685 FEET: HADOLPELAGIC ZONE
Despite the intense pressure and frigid temperature in the deepwater trenches and canyons, life still exists here, especially near hydrothermal vents on the ocean floor. Invertebrates such as starfish actually thrive.

Related: Ocean LifeGiant Star Fish and More in Antarcticaocean related postsFemale Sharks Can Reproduce Alone

Engineer Your Life

Engineer Your Life is an outreach initiative committed to sharing with college-bound young women the opportunities available to them in the world of engineering. Unfortunately they chose to use flash content and the website fails to follow simple usability guidelines (basic stuff like human readable urls, links that work without javascript…) but there is decent content. The use of flash and failing to pay attention to usability are highly correlated in my experience. The site profiles 12 engineers including Judy Lee:

Judy’s enthusiasm paid off. A few months later, the IKEA engineer asked her to design a children’s play mat. Judy was thrilled and soon found herself in IKEA headquarters in Sweden, where she worked with a team of engineers and product developers. It was at this moment that she realized her ideal job was one that truly offered a balance between creativity and problem solving.

Designing for IKEA
Judy began her new project by thinking about the way kids play. “I realized that kids today play indoors a lot. Maybe because the world seems a little more dangerous and parents are more protective. So I knew that this mat had to incorporate some kind of physical play element.” Rather than a static mat, Judy designed one resembling a giant lazy Susan that kids could spin around on. “Once I had the concept, the mechanical engineer in me took over. I needed something simple. Simplicity is awesome. My mat is basically two injection-molded pieces of plastic that spin on a set of interior wheels.”

Judy will never forget the experience of seeing her mat in an IKEA store. “It was incredible,” she recalls, “and it was such important validation for me that my ideas matter, they’re good, and they’re marketable.”

Dream Job at IDEO
Today, Judy has found her dream job in Palo Alto, California, at a company called IDEO, one of the country’s most innovative design firms. IDEO hires engineers, designers, psychologists, and businesspeople who work in teams to develop cutting-edge products (they created Apple Computer’s first mouse, for example). Judy designs children’s toys, pet products, and packaging for over-the-counter drugs and food. “I feel pretty lucky to have such a creative and interesting job. I’m surrounded by brilliant people. It doesn’t really seem like work. It’s just plain fun!”

Related: Beloit College: Girls and Women in ScienceWomen Choosing Other Fields Over Engineering and MathNASA You Have a ProblemGirls Sweep Top Honors at Siemens Competition in Math, Science and TechnologyWomen Working in Scienceother posts on poor usability

Engineering a Better World: Bike Corn-Sheller

photo of bike maize sheller

More appropriate technology from MIT’s D-Lab.

D-Lab-developed device makes corn processing more efficient

Jodie Wu, an MIT senior in mechanical engineering, spent the summer traveling from village to village in Tanzania to introduce a new system for processing the corn: A simple attachment for a bicycle that makes it possible to remove the kernels quickly and efficiently using pedal power. The device makes processing up to 30 times faster and allows one person to complete the job alone in one day.

The basic concept for the maize-sheller was first developed in Guatemala by an NGO called MayaPedal, and then refined by Wu last semester as a class project in D-Lab: Design, a class taught by Department of Mechanical Engineering Senior Lecturer Amy Smith. Now, thanks to Wu’s efforts, the technology is beginning to make its way around the world.

Thus, the owner of a bicycle, with a small extra investment, can travel from village to village to carry out a variety of useful tasks. A simple bike thereby becomes an ongoing source of income.

Wu refined the corn-sheller system, which was originally designed as a permanent installation that required a bicycle dedicated solely to that purpose, to make it an add-on, like Kiwia’s tools, that could be easily bolted onto an ordinary bike and removed easily.

Photo shows the prototype of the attachment. Engineering that makes a significant difference in people’s lives (especially those that need it the most) is even cooler than the latest high tech gizmos in my opinion. And those new gizmos are cool.

Related: Design for the Unwealthiest 90 PercentAppropriate Technology postsWater Pump Merry-go-RoundNepalese Entrepreneur Success – Tumaini Cycles blog (by