Author Archives: curiouscat

Physicist Swimming Revolution

A Revolution That Began With a Kick by Amy Shipley:

The answer, they say, cannot lie solely in the latest high-tech swimsuits introduced amid a swirl of controversy this winter, because the world-record smashing began at last year’s world championships — long before the newest of the newfangled apparel came out.

Swimmers, coaches and scientists say it is impossible to pinpoint one explanation. They cite many contributing factors, ranging from professional training groups that have sprouted across the United States to greater access to underwater cameras and other advanced technology.

But some say the most significant breakthrough has been a revival of a swimming maneuver developed more than 70 years ago by one of the physicists who worked on the atomic bomb.

Though utilized for decades, the underwater dolphin kick had not been fully exploited by the swimming mainstream until Olympic megastar Michael Phelps and a few other stars began polishing it — and crushing other swimmers with it — in recent years.

Very interesting and another example of how good ideas are often ignored for a long time.

The underwater dolphin kick attracted the interest of swimming innovators as early as the 1930s. The late Volney C. Wilson explored its possibilities before diving into later work on nuclear fission and the atomic bomb, according to David Schrader, a research professor at Marquette University who is Wilson’s biographer.

Schrader said Wilson, an alternate on the 1932 Olympic water polo team who studied fish propulsion at a Chicago aquarium, claimed to have shown the kick to Johnny Weissmuller, a training mate at the Illinois Athletic Club. “Weissmuller reproduced it perfectly, but was not impressed by it,” said Schrader in a phone interview, recalling a conversation with Wilson.
…
One of the first swimmers to turn heads with the underwater dolphin kick was David Berkoff, a Harvard graduate who became known for the “Berkoff Blastoff.” In 1988, Berkoff set several world records in the 100 backstroke by dolphin-kicking for 35 meters underwater at the start of the race.

Which goes to show you that you can gain advantages just by using the information that is available – your own innovation is not the only way to get ahead. Just doing a better job of adapting what others learn to your challenges can be very rewarding.

The Science Behind Spore

Spore is the hugely anticipated game from Wil Wright (the creator of Sims). In this webcast he discusses the science behind Spore. The creature creator was released this week and the full game will be released soon. Spore has been doing a great job marketing the product and they continue to do so with lots of material on You Tube including the Spore Ultimate Dance Contest.

The idea of the game is to design creatures that then go out into the world and interact and evolution takes it course. It looks very cool.

Mojave Desert Tortoises

photo of desert tortoise

Mojave Desert Tortoises by Pelf Nyok:

But we were very lucky 🙂 We managed to see 5 desert tortoises (Gopherus agassizii) on that particular day, and one of them was spotted on the dirt road (not in the burrow)!

Desert tortoises are thought to live 40 – 60 years. They grow relatively slowly and adult females are larger than adult males (for obvious reasons). They typically breed from April to June and the female tortoises lay between 1 and 11 eggs. Incubation period for eggs varies from 80 to more than 100 days.

Pelf is experiencing a turtle conservation training and tour of the USA (see Turtle Camps in Malaysia). Her blog is doing a great job showing they made a good selection in choosing her for the scholarship.

Cloned Immune Cells Clear Patient’s Cancer

Cloned immune cells cleared patient’s cancer

A patient whose skin cancer had spread throughout his body has been given the all-clear after being injected with billions of his own immune cells. Tests revealed that the 52-year-old man’s tumours, which spread from his skin to his lung and groin, vanished within two months of having the treatment, and had not returned two years later.

Doctors attempted the experimental therapy as part of a clinical trial after the man’s cancer failed to respond to conventional treatments.

The man is the first to benefit from the new technique, which uses cloning to produce billions of copies of a patient’s immune cells. When they are injected into the body they attack the cancer and force it into remission.

There are many more wonderful announcements than wonderful solutions that live up to the hope provided by the announcement. Still this is one in the long line of potentially wonderful treatments. If it turns out to be successful the whole world will benefit which is an example of why I am thankful so many countries are investing in science and technology.

Lancelet Genome Provides Answers on Evolution

Lancelet genome shows how genes quadrupled during vertebrate evolution by Robert Sanders

“If you compare the 23 chromosomes of humans with the 19 chromosomes of amphioxus, you find that both genomes can be expressed in terms of 17 ancestral pieces. So, we can say with some confidence that 550 million years ago, the common ancestor of amphioxus and humans had 17 chromosomal elements.”
…
Each of those 17 ancestral segments was duplicated twice in the evolution of vertebrates, after which most of the routine “housekeeping” genes lost the extra copies. Those left, totaling a couple thousand genes, found new functions that, Putnam said, make us different from all other creatures.

“These few thousand genes have been retooled to make humans more elaborate than their simpler ancestors. They are involved in setting up the body plan of an animal and differentiating different parts of the animal,” he said. “The hypothesis, pretty strongly supported by this data, is that the multiplication of this particular kind of gene and differentiation into different functions was important in the formation of vertebrates as we know them.”

“The most exciting thing that the amphioxus genome does is provide excellent evidence for the idea that Ono proposed in 1970, that the human genome had undergone two rounds of whole-genome duplication with subsequent losses,”

A great example of the scientific method in action. It often isn’t a matter of developing a theory one day, testing it the next and learning the outcome the next. The process can take decades for complex matters.

Tracking Down Tomato Troubles

Tracking the bug in tomatoes

David Acheson is the nation’s top food detective, but so far he has met his match in the wily tomato.

With the salmonella scare that has plagued tomatoes, Acheson has faced perhaps his biggest test—at least as far as outbreaks of illness go—since he assumed the newly created “food safety czar” post at the U.S. Food and Drug Administration about a year ago.

That position was born amid a growing concern that the FDA couldn’t get a grip on food safety, as tales of food-borne illnesses multiplied. Now comes salmonella-laden tomatoes that have sickened at least 277 people nationwide, hospitalizing 43.
…
The FDA concluded that the tainted tomatoes most likely came from Mexico or a certain part of Florida. The agency managed to narrow down the possible origins of the tainted tomatoes largely by a process of elimination. Based on the timing of their growing seasons and tomato harvests, many states or countries could not be the source of the tomatoes that caused illnesses, so they were deemed safe sources.

Restaurants and food retailers say they are now sourcing tomatoes from places deemed safe by the FDA. The outbreak has been a particularly tough one to crack because it has been so widespread. Illness has shown up in people who frequented a variety of restaurants, and who bought tomatoes at myriad grocery stores.

How Humans Evolved Allergies

Ancient antibody molecule offers clues to how humans evolved allergies

The chicken molecule, an antibody called IgY, looks remarkably similar to the human antibody IgE. IgE is known to be involved in allergic reactions and humans also have a counterpart antibody called IgG that helps to destroy invading viruses and bacteria. Scientists know that both IgE and IgG were present in mammals around 160 million years ago because the corresponding genes are found in the recently published platypus genome. However, in chickens there is no equivalent to IgG and so IgY performs both functions.

Lead researcher, Dr. Rosy Calvert said: “Although these antibodies all started from a common ancestor, for some reason humans have ended up with two rather specialised antibodies, whereas chickens only have one that has a much more general function.
…
Professor Brian Sutton, head of the laboratory where the work was done said: “It might be that there was a nasty bug or parasite around at the time that meant that humans needed a really dramatic immune response and so there was pressure to evolve a tight binding antibody like IgE. The problem is that now we’ve ended up with an antibody that can tend to be a little over enthusiastic and causes us problems with apparently innocuous substances like pollen and peanuts, which can cause life-threatening allergic conditions.”

$1 Billion for Life Sciences in Massachusetts

Petri dish for economic growth

So far, the signs are good. The bill commits $500 million for research facilities, infrastructure improvements, and other capital projects; $250 million for tax credits; and $250 million for research grants. The plan is flexible enough to support research at private institutions while making major investments at public universities. Patrick and legislators fended off the most flagrant attempts to divert money into political pet projects with little direct relevance to the biotech industry, such as $49.5 million for a science building at a state college with no graduate science programs.

As I have mentioned many times the centers of scientific excellence are important for economic success. Massachusetts has some great advantages with MIT, Harvard, many biotech companies… but still must continue to focus on staying a center of excellence.

Mathematicians Critique Journal Rankings

Three international math groups joined forces to issue a report last week decrying the use of citation statistics to evaluate scientific journals, research institutions and individual scientists. These statistics, sometimes called “bibliometrics,” measure how frequently a given journal’s articles are cited by other journals.

Read the report on Citation Statistics. This concern is justified. I do have some interest in some of these (and related) statistics but one must always remember their limitations.

No AP Stories

Michael Arrington, at Techcrunch, has announced a new policy Here’s Our New Policy On A.P. stories: They’re Banned. Good for him. I have long not linked to Associated Press stories due to their pointy haired boss understanding of the internet. The New York Times took awhile to understand how to respond to the new world but seems to be doing well now (so now I link to them). Other good sources: BBC (though they need to do better with webcasting), NPR, National Geographic, Science Blogs, PLoS.

Getting links is a good thing. When you have lawyers threatening people that are helping you, that is just plain dumb (and not the behavior I want to support by directing traffic to your site). Yes some bloggers do go to far and appropriate content they should not. So fine, do something about that. But you need to act sensibly, not like they have been (and that is not just limited to the problems that have landed them in trouble recently but their lack of making effective use of the internet for years).

The A.P. doesn’t get to make it’s own rules around how its content is used, if those rules are stricter than the law allows. So even thought they say they are making these new guidelines in the spirit of cooperation, it’s clear that, like the RIAA and MPAA, they are trying to claw their way to a set of property rights that don’t exist today and that they are not legally entitled to. And like the RIAA and MPAA, this is done to protect a dying business model – paid content.

So here’s our new policy on A.P. stories: they don’t exist. We don’t see them, we don’t quote them, we don’t link to them. They’re banned until they abandon this new strategy, and I encourage others to do the same until they back down from these ridiculous attempts to stop the spread of information around the Internet.