Author Archives: curiouscat

Bacteria Frozen for 8 Million Years In Polar Ice Resuscitated

Eight-million-year-old bug is alive and growing

Kay Bidle of Rutgers University in New Jersey, US, and his colleagues extracted DNA and bacteria from ice found between 3 and 5 metres beneath the surface of a glacier in the Beacon and Mullins valleys of Antarctica. The ice gets older as it flows down the valleys and the researchers took five samples that were between 100,000 and 8 million years old.

They then attempted to resuscitate the organisms in the oldest and the youngest samples. “We tried to grow them in media, and the young stuff grew really fast. We could plate them and isolate colonies,” says Bidle. The cultures grown from organisms found in the 100,000-year-old ice doubled in size every 7 days on average.

Whereas the young ice contained a variety of microorganisms, the researchers found only one type of bacterium in the 8-million-year-old sample. It also grew in the laboratory but much more slowly, doubling only every 70 days.

Related: What is an Extremophile?

Harvard Course: Understanding Computers and the Internet

Harvard Extension School – Computer Science E-1: Understanding Computers and the Internet

This course is all about understanding: understanding what’s going on inside your computer when you flip on the switch, why tech support has you constantly rebooting your computer, how everything you do on the Internet can be watched by others, and how your computer can become infected with a worm just by turning it on. In this course we demystify computers and the Internet, along with their jargon, so that students understand not only what they can do with each but also how it all works and why. Students leave this course armed with a new vocabulary and equipped for further exploration of computers and the Internet. Topics include hardware, software, the Internet, multimedia, security, website development, programming, and dotcoms. This course is designed both for those with little, if any, computer experience and for those who use a computer every day.

Nice job. via: Learn How The Darn Thing Works … from Harvard

Related: University of California, Berkeley course videosTechnology Talks at GoogleEngineering and Science Webcast LibrariesLectures from the Stanford Linear Accelerator Center

Aerogels – Cool Substances

First Prize for Weird

A solid that’s up to 99 percent gas, it is rigid to a light touch, soft to a stronger one, and shatters like glass if it’s put under too much pressure too quickly; it’s one of the most enigmatic of materials, as well as one of the most versatile.

It can withstand the heat of a direct flame; engineers use it for insulation on oil rigs and for warmth in the insoles of hiking boots worn in the coldest temperatures on Earth. NASA uses it to trap comet dust blowing through the universe at six kilometers per second.

Nicknamed “frozen smoke” after its ethereal appearance, aerogel is neither frozen nor smoke. It’s also surprisingly low tech—it’s been known since 1931

Together, these ingredients can form a structure that chemically resembles glass but is so full of whorls and crevices that one cubic centimeter has a total surface area equal to a football field’s. The lightest-weight solid in the world, aerogel weighs 1.2 milligrams per cubic centimeter—barely more than the air molecules around it. In fact, the material itself is almost entirely made of air, like a sponge that consists mostly of holes. Don’t let its lightness fool you: it’s strong. NASA photos show two grams of the material easily supporting a 2.5-kilogram brick.

And because the aerogels pack an enormous surface area into a tiny volume, small pieces can clear out many liters of water. Kanatzidis’s aerogels sopped up so much mercury that they diluted a solution of 645 parts per million down to 0.04 parts per million. They had similar effects on lead and cadmium, two other pollutants.

The new aerogels aren’t ready for widespread use: they’re made with platinum, so they’re extraordinarily expensive. But if other metals can be used to make them instead (Kanatzidis says they can), chunks of them could be dropped into polluted water, removing contaminants.

Cool. NASA Aerogel FAQ

Authors of Scientific Articles by Country

The United States National Science Foundation published – Changing U.S. Output of Scientific Articles: 1988–2003.

In an unexpected development in the early 1990s, the absolute number of science and engineering (S&E) articles published by U.S.-based authors in the world’s major peer-reviewed journals plateaued.

The unprecedented plateau in the number of U.S. S&E articles should not be confused with a decades-long and familiar decline in the U.S. share of the world’s S&E articles. As other states built up their S&E capabilities, the U.S. share of the world’s articles in natural sciences and engineering dropped from 38% in 1973 to 28% in 2003. This decline in share is not surprising, nor has it been viewed as a cause for concern. By many measures, including articles published in peer-reviewed journals, the United States has been the world’s leading scientific nation for decades and remains the world’s leading scientific nation.

Although the U.S. share of the world’s influential articles dropped substantially, the United States remained dominant in this area. At the end of the period studied, U.S. institutions were at least partially responsible for half of the world’s influential articles; no other major publishing center approached this figure. Moreover, compared with other major publishing centers, a considerably higher percentage of total U.S. output was classified as influential.

NSF includes a great deal of interesting data along with commentary. One compelling area is that of the location of authors of the top 1% of the most cited papers. The USA leads with 64.6% in 1992 and 56.6% in 2003. European Union-15 (15 countries for this measure) 23.3% to 27.7% (interesting, not what I would have predicted – which would have been a decline, though a small one). Japan 4.2% to 5.3%. East Asia – 4 (China, Singapore, South Korea, and Taiwan) from .1 to 1.1% (and rising rapidly – .5% in 2001 to .8% in 2002) – interesting but not so surprising, basically what I would expect – rapid gains. All other countries: 7.8% in 1992 and 9.3% in 2003. I predict these figures will have to break out India sometime in the next 10 years – I wish they did now though I expect it is a fairly low figure. China will also be reported separately, I believe.

The NSF data includes all sorts of great stuff. For the same top 1% of cited articles by topic East Asia – 4 in Engineering/Technology: 1992 .9% – 2003 7.2% in Social Sciences 0.0% to .6% in Mathematics 1.3% to 5.6%. In Engineering/Technology the USA dropped from 63.3% to 45.4%.

This is more data supporting what I have said before Science Excellence and Economic Benefits:
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Where is “Everybody”

The Fermi Paradox: Back with a vengeance

The Fermi Paradox is the contradictory and counter-intuitive observation that we have yet to see any evidence for the existence of ETI’s. The size and age of the Universe suggests that many technologically advanced ETI’s ought to exist. However, this hypothesis seems inconsistent with the lack of observational evidence to support it.i”The Fermi Paradox is the contradictory and counter-intuitive observation that we have yet to see any evidence for the existence of ETI’s. The size and age of the Universe suggests that many technologically advanced ETI’s ought to exist. However, this hypothesis seems inconsistent with the lack of observational evidence to support it.

There are more stars in the Universe than we can possibly fathom. Any conception of ‘rare’ ‘not enough time’ or ‘far away’ has to be set against the inability of human psychology to grasp such vast cosmological scales and quantities. The Universe and the Milky Way are extremely old, our galaxy has been able to produce rocky planets for quite some time now, and our earth is a relative new-comer to the galaxy.

The fact that our Galaxy appears unperturbed is hard to explain. We should be living in a Galaxy that is saturated with intelligence and highly organized. Thus, it may be assumed that intelligent life is rare, or, given our seemingly biophilic Universe, our assumptions about the general behaviour of intelligent civilizations are flawed.

A paradox is a paradox for a reason: it means there’s something wrong in our thinking.

I agree. I am going with the it is hard for life to start and it what has started is really far away (so we can’t detect what life there is). Another option I could believe is once you reach a certain level of technological sophistication you often wipe out your civilization – leaving relatively short periods where civilizations produce signals we can detect (included in this is creating something that wipes themselves out, and a nasty thing [virus, bacteria, whatever…] that spreads everywhere because of instant transportation and wipes everybody out). Or maybe civilizations quickly go through a technology phase producing signals we can detect and move onto something else (though I can’t really understand why or what that would mean really). Or, similar to that one, for some reason we are really really odd in our move to technology – maybe most of the time things just stay in a natural state and nothing evolves that wants to do more than eat and sleep (if they sleep). That seems really unlikely but…

YouTube Architecture

This very interesting post by Todd Hoff gives an overview of the YouTube Architecture and thus some interesting ideas on large scale web application architecture.

Each video hosted by a mini-cluster. Each video is served by more than one machine.
* Using a a cluster means:
– More disks serving content which means more speed.
– Headroom. If a machine goes down others can take over.
– There are online backups.
* Servers use the lighttpd web server for video:
– Apache had too much overhead.
– Uses epoll to wait on multiple fds.
– Switched from single process to multiple process configuration to handle more connections.
* Most popular content is moved to a CDN (content delivery network):
– CDNs replicate content in multiple places. There’s a better chance of content being closer to the user, with fewer hops, and content will run over a more friendly network.
– CDN machines mostly serve out of memory because the content is so popular there’s little thrashing of content into and out of memory.
* Less popular content (1-20 views per day) uses YouTube servers in various colo sites.
– There’s a long tail effect. A video may have a few plays, but lots of videos are being played.

I have noticed a large increase in significant delays (taking 10-20 seconds to start playing) with YouTube in the last few months.

Contradictory Medical Studies

I have written before about false research findings. This is an important topic – we need to remember that the interpritation of one study (or many studies) in not necessarily conclusive. Another article – When Medical Studies Collide:

Two years ago, the headlines blared that echinacea was a bust. Millions of people who believed the best-selling herbal remedy was warding off colds were probably deluding themselves, according to The New England Journal of Medicine. Now echinacea is back in the news. This time, it works! So says a study in The Lancet Infectious Diseases.

How could two studies come to such different conclusions—especially when there have been no new trials of the herb? While the New England Journal reported on one clinical trial, authors of the latest report combined data from previous studies, a controversial approach called a meta-analysis. Its conclusion is dramatically different—not just from that of the New England Journal paper, but also from a review last year of the same studies.

The problem is, the world of medical and health research is messier than most people realize. Black-and-white answers are rare, even when it comes to a single drug trial.

Just remember those last two sentences. Very simple. And most people would agree if you showed them those two sentences and asked if they agreed. But then they see a headline and away they go… Just force yourself to repeat that idea every time you see a health report. Don’t believe the headline without strong support.

An interesting tidbit from the article. The coneflower is the source of echinacea. I tried to find photos that I am pretty sure I have on my hard drive of the flowers in my back yard, but I couldn’t.

Related: Correlation is Not CausationAnother Paper Questions Scientific Paper Accuracy

High Pay for Engineering Graduates – July 2007

From the National Association of Colleges and Employers survey , Starting Salary Offers to Class of 2007 Continue to Rise.

Degree Average Salary Offer Increase over 2006
Chemical Engineering $59,361 5.4%
Civil Engineering $48,509 5.4%
Computer Engineering $56,201 4.8%
Computer Science $53,396 4.1%
Mechanical Engineering $54,128 4.6%
Electrical Engineering $55,292 3.2%
Information sciences and systems $50,852 4.6%

Economics was the next highest pay reported by NACE at $48,483. So once again engineering graduates are being paid well. Some other majors: Accounting – $46,718; English – $32,553 and Psychology $31,631.

Related: Lucrative college degreesEngineering Graduates Get Top Salary Offers (2006)Engineering Starting Salaries (2005)science and engineering career related posts