Category Archives: Students

Items for students and others, interested in learning about science and engineering and the application of science in our lives. We post many of the general interest items here.

Thinking Slime Moulds

Those amazing slime moulds

In other words, science has shown how unicellular organisms like the slime mould have the ability to learn and remember. Memory and learning seem to not be limited to us humans and can be found, as expected from an evolutionary perspective across organisms.

The amoeba Physarum polycephalum is quite a performer as it has been able to navigate mazes and solve simple puzzles.
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Nakagaki, T., Yamada, H. & A. TÃ³th. “Intelligence: Maze-solving by an amoeboid organism” Nature 407, 470 (2000).

The plasmodium of the slime mould Physarum polycephalum is a large amoeba-like cell consisting of a dendritic network of tube-like structures (pseudopodia). It changes its shape as it crawls over a plain agar gel and, if food is placed at two different points, it will put out pseudopodia that connect the two food sources. Here we show that this simple organism has the ability to find the minimum-length solution between two points in a labyrinth.

What Are Slime Moulds

Members of this class are commonly referred to as slime moulds. These have thought to belong to both animal and fungi kingdoms at one time or another. It’s now known that they are quite unrelated to animals and fungi and now are classified in the Kingdom Protista.

However slime moulds do exhibit characteristics of both fungi and animals. In the feeding stage, the slime moulds moves about as a mass of protoplasm (the plasmodium) feeding on bacteria, spores, and other organic matter much like an amoeba. When the food supply is exhausted or other unfavourable conditions occur, the plasmodium changes, taking on the appearance of a fungus.

IT Employment Hits New High Again

Damn the Economy! IT Employment Rises to New Heights

Unemployment among business-technology professionals has fallen to a decade low as the size of the IT workforce has risen to a record level in 2007, according to CIO Insight analysis of U.S. Bureau of Labor Statistics data. Joblessness among American IT workers averaged 2.1 percent last year, down from 2.5 percent in 2006. That’s the lowest unemployment rate for IT pros since the government began using the current method to track employment in 2000, when IT joblessness stood at 2.2 percent.

In 2007, according to our analysis, 3,758,000 workers in the U.S. held IT jobs; another 79,000 people who consider themselves business-technology professionals were unemployed. IT employment grew 8.5 percent last year. By this calculation, IT managers and staffers represent nearly 2.6 percent of employed U.S. workers in 2007.

Synthesizing a Genome from Scratch

In the new study, scientists ordered 101 DNA fragments, encompassing the entire Mycoplasma genome, from commercial DNA synthesis companies. These fragments were designed so that each overlapped its neighboring sequence by a small amount; these overlapping stretches stick together, thanks to the chemical properties of DNA. Researchers then bound the fragments piece by piece, eventually generating the full 582,970 base pair Mycoplasma sequence.

Elbaite with Albite

Photo of Elbaite with Albite, Na(Li, Al)₃Al₆(BO)₃)₃Si₆O₁₈(OH)₄, at the Smithsonian Natural History Museum in Washington DC, by John Hunter.

Science and Engineering Instructional Webcasts

doFlick offers user-generated educational, technical and instructional videos on science and engineering. Examples include: Simple Circuits – How to do a basic leak test in vacuum systems – Bacteria in the Human Mouth – Transverse Standing Waves – Pulsed Layer Deposition Overview

The site offers a short videos on science and engineering topics (plus some other topics as well). The site fills a niche that is different that any other site I have seen. The videos are largely tips on lab or engineering techniques or edited labs. These are videos that might appear on network TV but they are exactly the type of resource that makes the internet great. Lets build this resource: upload your own webcasts. There is a great advantage to short targeted online videos (compared to full course lectures – which are also great) because the short targeted videos allow for targeted linking specifically to the video content you want to link to.

This is definitely worth adding to your bookmarks. Or you can just bookmark our directory of science and engineering videos.

Fancy Camera Flash Trigger

Some neat discussion of the engineering behind the RadioPopper P1 is included on the site:

The RadioPopper was designed to solve specific problems faced by event and wedding photographers. Most of us already own a pair or more of the various pro flash units from our camera manufacturers. These flashes are tied closely to the metering systems of our cameras
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Radio flash triggering devices allow a more consistent triggering means – but they lack any ability to dynamically adjust the flash power as the situation changes.
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With RadioPopper you’re no longer forced to choose between usability and reliability. Enjoy all the utility and features built into your existing Canon and Nikon flash units while overcoming the single weak link of the wireless system – the “line of sight” infrared communication setup.

The radiopopper blog has interesting posts and discussion. Via: Engineering for the People – Radio Triggers

SelFISHing

Until All the Fish Are Gone

Scientists have been warning for years that overfishing is degrading the health of the oceans and destroying the fish species on which much of humanity depends for jobs and food. Even so, it would be hard to frame the problem more dramatically than two recent articles in The Times detailing the disastrous environmental, economic and human consequences of often illegal industrial fishing.

Sharon LaFraniere showed how mechanized fishing fleets from the European Union and nations like China and Russia – usually with the complicity of local governments – have nearly picked clean the oceans off Senegal and other northwest African countries. This has ruined coastal economies and added to the surge of suddenly unemployed migrants who brave the high seas in wooden boats seeking a new life in Europe, where they are often not welcome.

The second article, by Elisabeth Rosenthal, focused on Europe’s insatiable appetite for fish – it is now the world’s largest consumer. Having overfished its own waters of popular species like tuna, swordfish and cod, Europe now imports 60 percent of what it consumes. Of that, up to half is contraband, fish caught and shipped in violation of government quotas and treaties.

I have mentioned the very serious problem of over-fishing the oceans:

The measured effects today should be enough for sensible people to realise the tragedy of the commons applies to fishing and obviously governments need to regulate the fishing to assure that fishing is sustainable. This is a serious problem exacerbated by scientific and economic illiteracy. The obvious scientific and economic solution is regulation. Determining the best regulation is tricky (and political and scientific and economic) but obviously regulation (and enforcement) is the answer.

Sadly this selfish consuming now and passing the problem to those who follow is common lately: Tax Our Children and Grandchildren Instead of Us. Remember when parents actually wanted to leave the world better off for children? What a quaint old idea.

Plants, Unikonts, Excavates and SARs

image of 4 biology supergroups

The Tree of Life Has Lost a Branch

“The results were pretty astounding. All non-bacterial life on Earth – called eukaryotic life – can now be divided into four main groups instead of the five groups that we have been working with up to now,” says Kamran Shalchian-Tabrizi, an associate professor from the University of Oslo’s Department of Biology
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All life on Earth can be divided into two essentially different life forms—eukaryotes and prokaryotes. The eukaryotes gather their genetic material in a nucleus, while the prokaryotes (bacteria and archaea) have their genetic material floating freely in the cell. Eukaryotic organisms—such as humans—can, as a result of the new findings, be divided into the following four categories:

Plants (green and red algae, and plants)
Opisthokonts (amoebas, fungi, and all animals—including humans)
Excavates (free-living organisms and parasites)
SAR (the new main group, an abbreviation of Stramenophiles, Alveolates, and Rhizaria, the names of some of its members)

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Three billion years ago, there was only bacteria and Archaea. Eukaryotic life, which comprises all multi-celled organisms, developed in the sea—probably between 1.2 and 1.6 billion years ago. It was not before about 500 million years ago that the first creatures crept onto land.

New Questions on Treating Cholesterol

For decades, the theory that lowering cholesterol is always beneficial has been a core principle of cardiology. It has been accepted by doctors and used by drug makers to win quick approval for new medicines to reduce cholesterol.

But now some prominent cardiologists say the results of two recent clinical trials have raised serious questions about that theory — and the value of two widely used cholesterol-lowering medicines, Zetia and its sister drug, Vytorin.
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“The idea that you’re just going to lower LDL and people are going to get better, that’s too simplistic, much too simplistic,” said Dr. Eric J. Topol

via: The Cholesterol Mystery

Invest in Science for a Strong Economy

From a consistent voice in favor of scientific investment comes a call to invest in basic scientific research. Craig Barrett, Chairman of the Board at Intel, pens opinion piece – Flagging Economy Needs Science Investments

Legislation in the form of the America Competes Act was passed in the House and Senate in 2007, and it appeared the United States was finally going to move forward after years of neglect to increase investment in math, science and basic research. All parties agreed that our competitiveness in the 21st century was at stake and we needed to act.

So much for political will.

The recent budget deal between Republicans and Democrats effectively flat-funds or cuts funding for key science agencies. Excluding “earmarks,” the Department of Energy funding for fiscal year 2008 is up only 2.6 percent, thus losing ground to inflation. The National Science Foundation is up 2.5 percent, with the same result. The National Institute of Standards and Technology is up 11 percent, however the labs where research happens only get 2.3 percent, again losing ground to inflation.
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What are they thinking? When will they wake up? It may already be too late; but I genuinely think the citizenry of this country wants the United States to compete. If only our elected leaders weren’t holding us back.

It is a shame that the leaders are doing such a bad job. I wrote about their failures recently in the Curious Cat Investing and Economic Blog, Politicians Again Raising Taxes On Your Children. But we keep electing people that think the way to improve the economy is to borrow some more money (and science and engineering investments seem very far down on their lists of what to spend money on) for someone to pay back in the future. So while our leaders are disappointing, society at large is getting what they ask for.
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