Category Archives: Life Science

Why ‘Licking Your Wounds’ Works

Why ‘Licking Your Wounds’ Actually Works

scientists found that histatin, a small protein in saliva previously only believed to kill bacteria was responsible for the healing.

To come to this conclusion, the researchers used epithelial cells that line the inner cheek, and cultured in dishes until the surfaces were completely covered with cells. Then they made an artificial wound in the cell layer in each dish, by scratching a small piece of the cells away.

In one dish, cells were bathed in an isotonic fluid without any additions. In the other dish, cells were bathed in human saliva. After 16 hours the scientists noticed that the saliva treated “wound” was almost completely closed. In the dish with the untreated “wound,” a substantial part of the “wound” was still open. This proved that human saliva contains a factor which accelerates wound closure of oral cells.

Because saliva is a complex liquid with many components, the next step was to identify which component was responsible for wound healing. Using various techniques the researchers split the saliva into its individual components, tested each in their wound model, and finally determined that histatin was responsible.

Microbes Beneath the Sea Floor

This stuff is cool. Here is the full press release from Penn State, Microbes beneath sea floor genetically distinct

Tiny microbes beneath the sea floor, distinct from life on the Earth’s surface, may account for one-tenth of the Earth’s living biomass, according to an interdisciplinary team of researchers, but many of these minute creatures are living on a geologic timescale.

“Our first study, back in 2006, made some estimates that the cells could double every 100 to 2,000 years,” says Jennifer F. Biddle, PhD. recipient in biochemistry and former postdoctoral fellow in geosciences, Penn State. Biddle is now a postdoctoral associate at the University of North Carolina, Chapel Hill.

The researchers looked at sediment samples from a variety of depths taken off the coast of Peru at Ocean Drilling Site 1229. They report their findings in today’s (July 22) online issue of the Proceedings of the National Academy of Sciences.

“The Peruvian Margin is one of the most active surface waters in the world and lots of organic matter is continuously being deposited there,” says Christopher H. House, associate professor of geoscience. “We are interested in how the microbial world differs in the subsea floor from that in the surface waters.”

The researchers used a metagenomic approach to determine the types of microbes residing in the sediment 3 feet, 53 feet, 105 feet and 164 feet beneath the ocean floor. The use of the metagenomics, where bulk samples of sediment are sequences without separation, allows recognition of unknown organism and determination of the composition of the ecosystem.

“The results show that this subsurface environment is the most unique environment yet studied metagenomic approach known today,” says House. “The world does look very different below the sediment surface.” He notes that a small number of buried genetic fragments exist from the water above, but that a large portion of the microbes found are distinct and adapted to their dark and quiet world.

The researchers, who included Biddle; House; Stephan C. Schuster, associate professor; and Jean E. Brenchley, professor, biochemistry and molecular biology, Penn State; and Sorel Fitz-Gibbon, assistant research molecular biologist at the Center for Astrobiology, UCLA, found that a large percentage of the microbes were Archaea, single-celled organisms that look like Bacteria but are different on the metabolic and genetic levels. The percentage of Archaea increases with depth so that at 164 feet below the sea floor, perhaps 90 percent of the microbes are Archaea. The total number of organisms decreases with depth, but there are lots of cells, perhaps as many as 1,600 million cells in each cubic inch.
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DNA Passed to Descendants Changed by Your Life

How your behaviour can change your children’s DNA

Until recently that would also have been the opinion of most scientists. Genes, it was thought, were highly resilient. Even if people did wreck their own DNA through bad diet, smoking and getting fat, that damage was unlikely to be passed to future generations.

Now, however, those assumptions are being re-examined. At the heart of this revolution is a simple but controversial idea: that DNA can be modified or imprinted with the experiences of your parents and grandparents.

According to this new science, known as epigenetics, your ancestors’ diet, smoking habits, exposure to pollutants and levels of obesity could be affecting you today. In turn, your lifestyle could affect your children and grandchildren.
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If we drink heavily, take drugs, get fat or wait too long to reproduce, then epigenetics might start tying up some of the wrong genes and loosening the bonds on others. Sometimes those changes will affect sperm and egg cells.

It seems to me this area is still far from having conclusive proof. But it is another great example of scientists seeking to improve our knowledge of how things work.

2 Mysterious Species in the UK

Plane Bug - UK

Mystery insect found in Museum garden

This mystery bug has not been seen in the UK before and has made the Natural History Museum’s Wildlife Garden its home. The tiny bug is baffling insect experts at the Museum who are still trying to identify the mystery newcomer. The almond-shaped bug is red and black and about the size of a grain of rice
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Experts checked the new bug with those in the Museum’s national insect collection of more than 28 million specimens. Amazingly, there is no exact match.
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The bug closely resembles the fairly rare species Arocatus roeselii, which is usually found in central Europe. However, the roeselii bugs are brighter red than this new bug and they are usually associated with alder trees rather than plane trees.

However, the National Museum in Prague discovered an exact match to the mystery bug in their collections – an insect that was found in Nice and is classified as Arocatus roeselii. ‘There are two possible explanations,’ explains Barclay. ‘That the bug is roeselii and by switching to feed on the plane trees it could suddenly become more abundant, successful and invasive. The other possibility is that the insect in our grounds may not be roeselii at all.’

The Museum is working with international colleagues to analyse the bug’s body shape, form and DNA to see whether it is a newly discovered species or if it is in fact Arocatus roeselii.

Here is a green bug from my trip to Clifton Gorge Nature Preserve that is probably easier to identify. Or how about this insect from the Forest Glen Preserve, Illinois. Or how about this one at Our Lady of Gethsemani Abbey, in Kentucky.

Help us find out more about the mysterious alien “Ghost Slug”
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Speciation of Dendroica Warblers

Speciation for Dendroica Warblers

They developed a mathematical model that attributed patterns of speciation to the way that closely related species divide up their environment. According to this model, when there are few relatives around to compete for resources, such as when an environment is first colonized, species differentiate rapidly.
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This model is robust: even when the authors assumed that their phylogenetic tree contains only 25 percent of all Dendroica species, they found that their Î³ test was still valid, indicating that this genus experienced an explosive bout of adaptive radiation before settling down to a “more normal” rate of speciation.

This mathematical model provides an incisive tool to gain a clearer understanding of the pattern and rate of speciation for groups of closely related species, even in the absence of a fossil record, simply by analyzing their DNA.

The Brain Hides Information From Us To Prevent Mistakes

“The main finding of the study is that it has enabled us to confirm that tactile sensations are initially located unconsciously in anatomical coordinates, but they reach our awareness only when the brain has formed an image of their origin in the spatial coordinates, external to the body,” explained Salvador Soto-Faraco. The coexistence of different spatial reference frames in the brain has been known for some time. So has the fact that confusions between them may result in some cases, such as when we invert the usual anatomical position of some body parts (e.g. when crossing our arms over the body midline). “The brain sorts out problems of this kind rapidly, in a matter of tenths of a second. To do so, however, it has to integrate information arriving in formats that are quite disparate”, Sotoa-Faraco added. “Our research has helped us understand how this process works and how the brain manages spatial realignment when faced with conflict”, he concluded.

Interesting. I think my brain might be hiding more from me lately (like right now where the key to my shed is) 🙂

Too Toxic for Microorganisms – Not

The Pit of Life and Death by Richard Solensky:

The water became as acidic as lemon juice, creating a toxic brew of heavy metal poisons including arsenic, lead, and zinc. No fish live there, and no plants line the shores. There aren’t even any insects buzzing about. The Berkeley Pit had become one of the deadliest places on earth, too toxic even for microorganisms. Or so it was thought.
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the researchers identified it as Euglena mutabilis, a protozoan which has the remarkable ability of being able to survive in the toxic waters of the Berkeley Pit by altering its local environment to something more hospitable. Through photosynthesis, it increases the oxygen level in the water, which causes dissolved metals to oxidize and precipitate out. In addition, it pulls iron out of the water and sequesters it inside of itself. This makes it a classic example of an extremophile.

500 Million-year-old Stromatolite Fossil

VMNH scientists confirm discovery of 500 million-year-old fossil

Virginia Museum of Natural History scientists have confirmed that an approximately 500 million-year-old stromatolite was recently discovered at the Boxley Blue Ridge Quarry near Roanoke, Virginia. This is the first-ever intact stromatolite head found in Virginia, and is one of the largest complete “heads” in the world, at over 5 feet in diameter and weighing over 2 tons. Stromatolites are among the earliest known life forms, and are important in helping scientists understand more about environments that existed in the past.

A stromatolite is a mound produced in shallow water by mats of algae that trap mud and sand particles. Another mat grows on the trapped sediment layer and this traps another layer of sediment, growing gradually over time. Stromatolites can grow to heights of a meter or more. They are uncommon today but their fossils are among the earliest evidence for living things. The oldest stromatolites have been dated at 3.46 billion years old.

Exploring the Signaling Pathways of Cells

New probe may help untangle cells’ signaling pathways

MIT researchers have designed a new type of probe that can image thousands of interactions between proteins inside a living cell, giving them a tool to untangle the web of signaling pathways that control most of a cell’s activities.

“We can use this to identify new protein partners or to characterize existing interactions. We can identify what signaling pathway the proteins are involved in and during which phase of the cell cycle the interaction occurs,” said Alice Ting, the Pfizer-Laubach Career Development Assistant Professor of Chemistry and senior author of a paper describing the probe published online June 27 by the Journal of the American Chemical Society.

The new technique allows researchers to tag proteins with probes that link together like puzzle pieces if the proteins interact inside a cell. The probes are derived from an enzyme and its peptide substrate. If the probe-linked proteins interact, the enzyme and substrate also interact, which can be easily detected.

To create the probes, the researchers used the enzyme biotin ligase and its target, a 12-amino-acid peptide.

Pesticide Laced Fertiliser Ruins Gardens

Home-grown veg ruined by toxic fertiliser

Aminopyralid, which is found in several Dow products, the most popular being Forefront, a herbicide, is not licensed to be used on food crops and carries a label warning farmers using it not to sell manure that might contain residue to gardeners. The Pesticides Safety Directorate, which has issued a regulatory update on the weedkiller, is taking samples from affected plants for testing.

Problems with the herbicide emerged late last year, when some commercial potato growers reported damaged crops. In response, Dow launched a campaign within the agriculture industry to ensure that farmers were aware of how the products should be used. Nevertheless, the herbicide has now entered the food chain. Those affected are demanding an investigation and a ban on the product. They say they have been given no definitive answer as to whether other produce on their gardens and allotments is safe to eat.

It appears that the contamination came from grass treated 12 months ago. Experts say the grass was probably made into silage, then fed to cattle during the winter months. The herbicide remained present in the silage, passed through the animal and into manure that was later sold. Horses fed on hay that had been treated could also be a channel.