Category Archives: Life Science

Clay Versus MRSA Superbug

“Healing clays” hold promise in fight against MRSA superbug infections and disease

Scientists from Arizona State University report that minerals from clay promise could provide inexpensive, highly-effective antimicrobials to fight methicillin-resistant Staphylococcus aureus (MRSA) infections that are moving out of health care settings and into the community.
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Unlike conventional antibiotics routinely administered by injection or pills, the so-called “healing clays” could be applied as rub-on creams or ointments to keep MRSA infections from spreading
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In their latest study, funded by the National Institutes of Health, Williams, Haydel and their colleagues collected more than 20 different clay samples from around the world to investigate their antibacterial activities… The researchers identified at least two clays from the United States that kill or significantly reduce the growth of these bacteria

Also listen to a podcast with the researchers, Lynda Williams and Shelly Haydel, that provides much more detail. The Science Studio podcasts from Arizona State University provides great science podcasts.

First Lungless Frog Found

The first recorded species of frog that breathes without lungs has been found in a clear, cold-water stream on the island of Borneo in Indonesia. The frog, named Barbourula kalimantanensis, gets all its oxygen through its skin.
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Previously the only four-limbed creatures known to lack lungs were salamanders. A species of earthwormlike, limbless amphibian called a caecilian is also lungless. Tetrapods, or four-limbed creatures, that develop without lungs are rare evolutionary events, Bickford and colleagues write.

The trait in amphibians is likely an adaptation to life between water and land and their ability to respire through the skin. The researchers suggest lunglessness in B. kalimantanensis may be an adaptation to the higher oxygen content in fast-flowing, cold water.
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Wake added that for most amphibians, the majority of gas exchange happens through the skin. A low but significant amount of respiration occurs via simple, sac-like lungs. Most species, he noted, have mating calls that require lungs. So biologists are unsure why a few species have entirely gotten rid of the organs, Wake said.

Scientists Witness the Birth of a Brain Cell

The Birth of a Brain Cell: Scientists Witness Neurogenesis

For the first time, researchers have developed a way to view stem cells in the brains of living animals, including humans—a finding that allows scientists to follow the process neurogenesis (the birth of neurons). The discovery comes just months after scientists confirmed that such cells are generated in adult as well as developing brains.
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The key ingredient in this process is a substance unique to immature cells that is neither found in mature neurons nor in glia, the brain’s nonneuronal support cells. Maletic-Savatic and her colleagues collected samples of each of the three cell types from rat brains (stem cells from embryonic animals, the others from adults) and cultured the varieties separately in the lab. They were able to determine the chemical makeup of each variety – and isolate the compound unique to stem cells – with nuclear magnetic resonance (NMR) spectroscopy. (NMR helps to determine a molecule’s structure by measuring the magnetic properties of its subatomic particles.) Although the NMR could identify the biomarker, but not its makeup, Maletic-Savatic speculates it is a blend of fatty acids in a lipid (fat) or lipid protein.

Bacteria Survive On All Antibiotic Diet

Bacteria Survive on All-Antibiotic Diet

The scientists wanted to make sure they had a good control—a group of bacteria that didn’t grow at all—so they bathed some of the bacteria in antibiotics. But there was a problem: The bacteria didn’t just survive in the antibiotics, they consumed them. The researchers then gathered soil from 11 sites with varying degrees of exposure to human-made antibiotics (from manure-filled cornfields to an immaculate forest) and found that every site contained bacteria, including relatives of Shigella and the notorious E. coli that could survive solely on antibiotics. And these weren’t just piddling doses—the bacteria could tolerate levels of antibiotics that were up to 100 times higher than would be given to a patient, and 50 times higher than what would qualify a bacterium as resistant.

Royal Ant Genes

Royal corruption is rife in the ant world

“The accepted theory was that queens were produced solely by nurture: certain larvae were fed certain foods to prompt their development into queens and all larvae could have that opportunity,” explains Dr Hughes. “But we carried out DNA fingerprinting on five colonies of leaf-cutting ants and discovered that the offspring of some fathers are more likely to become queens than others. These ants have a ‘royal’ gene or genes, giving them an unfair advantage and enabling them to cheat many of their altruistic sisters out of their chance to become a queen themselves.”
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“When studying social insects like ants and bees, it’s often the cooperative aspect of their society that first stands out,” says Dr Hughes. “However, when you look more deeply, you can see there is conflict and cheating – and obviously human society is also a prime example of this. It was thought that ants were an exception, but our genetic analysis has shown that their society is also rife with corruption – and royal corruption at that!”

Interesting. I am not convinced of the “corruption” but maybe the research itself provides more evidence of this trait not just being interesting but equivalent to corruption.

Androgenesis

All Dad by Carl Zimmer

This week’s revelation is androgenesis. Androgenesis is what happens when kids get all their genes from their father.
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Androgenesis, it turns out, transforms fatherhood into a parasitic invasion. It begins like normal fertilization, with a sperm fusing to an egg. But then the egg’s DNA gets hurled out of its nucleus, so that the sperm’s genes are the only ones left in the egg. The egg begins to develop into an embryo, but only after it has lost the mother’s DNA.

Don’t Eat What Doesn’t Rot

Here is a nice interview of Michael Pollan by Amy Goodman – Don’t Eat Anything That Doesn’t Rot:

Another assumption of nutritionism is that you can measure these nutrients and you know what they’re doing, that we know what cholesterol is and what it does in our body or what an antioxidant is. And that’s a dubious proposition.
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if you look at the layout of the average supermarket, the fresh whole foods are always on the edge. So you get produce and meat and fish and dairy products. And those are the foods that, you know, your grandmother would recognize as foods. They haven’t changed that much. All the processed foods, the really bad stuff that is going to get you in trouble with all the refined grain and the additives and the high-fructose corn syrup, those are all in the middle. And so, if you stay out of the middle and get most of your food on the edges, you’re going to do a lot better.

Appetite for Destruction

photo of Mountain Pine Beetle

Appetite for Destruction (link broken, so I removed it) by Eric R. Olson:

“Once the beetles are at the level they’re at in British Columbia, there’s nothing you can do – it’s like a rapidly spreading fire,” says Barbara Bentz, research entomologist with the U.S. Department of Agriculture Forest Service. If the beetle continues to devour trees at the current rate, 80 percent of British Columbia’s mature pines will be killed off by 2013, according to Natural Resources Canada, an arm of the Canadian government.

Global climate change, which is pushing temperatures higher, has altered the beetle’s natural life cycle. Now the insect threatens one of the world’s largest forest systems: Canada’s boreal forest, a 600-mile-wide band of pine woodlands that stretches from the Yukon in Alaska all the way to Newfoundland on the East Coast.
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The source of all this destruction is an insect not much bigger than a grain of rice. A native of North America, the pine beetle does its damage by burrowing beneath the bark and feeding on the living tissue of the tree called the phloem. This tissue is composed of long tubes that transport nutrients from root to limb, and once it is destroyed, the tree can no longer survive.

In the past, cold snaps — quick drops in temperature in the spring and fall — have kept beetle populations in check. Although the insects can survive temperatures as low as minus 35 degrees Fahrenheit in the winter, it takes time for their bodies to accumulate enough glycol, the same ingredient found in antifreeze, to survive such frigid temperatures.

Photo: Mountain Pine Beetle (Dendroctonus Ponderosae) under a scanning electron microscope. [Credit: Leslie Manning/Canadian Forest Service]

Secrets of Spider Silk’s Strength

The strength of a biological material like spider silk lies in the specific geometric configuration of structural proteins, which have small clusters of weak hydrogen bonds that work cooperatively to resist force and dissipate energy, researchers in Civil and Environmental Engineering have revealed.

This structure makes the lightweight natural material as strong as steel, even though the “glue” of hydrogen bonds that hold spider silk together at the molecular level is 100 to 1,000 times weaker than the powerful glue of steel’s metallic bonds or even Kevlar’s covalent bonds.
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“Using only one or two hydrogen bonds in building a protein provides no or very little mechanical resistance, because the bonds are very weak and break almost without provocation,” said Buehler, the Esther and Harold E. Edgerton Assistant Professor in the Department of Civil and Environmental Engineering. “But using three or four bonds leads to a resistance that actually exceeds that of many metals. Using more than four bonds leads to a much-reduced resistance. The strength is maximized at three or four bonds.”

Ballast-free Ships

ballast-free ship’ could cut costs while blocking aquatic invaders

University of Michigan researchers are investigating a radical new design for cargo ships that would eliminate ballast tanks, the water-filled compartments that enable non-native creatures to sneak into the Great Lakes from overseas. At least 185 non-native aquatic species have been identified in the Great Lakes, and ballast water is blamed for the introduction of most—including the notorious zebra and quagga mussels and two species of gobies.

This week, the U.S. Saint Lawrence Seaway Development Corp. will implement new rules designed to reduce Great Lakes invaders. Ships will be required to flush ballast tanks with salt water before entering the Seaway, a practice corporation officials describe as an interim measure, not a final solution.
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Instead of hauling potentially contaminated water across the ocean, then dumping it in a Great Lakes port, a ballast-free ship would create a constant flow of local seawater through a network of large pipes, called trunks, that runs from the bow to the stern, below the waterline.

“In some ways, it’s more like a submarine than a surface ship,” Parsons said. “We’re opening part of the hull to the sea, creating a very slow flow through the trunks from bow to stern.