Category Archives: Life Science

Another Bacteria DNA Trick

A DNA shift never before seen in nature

For several decades, researchers have known that it is possible to modify synthetic oligonucleotides (short strands of DNA) by adding sulfur to the sugar-phosphate DNA backbone as a phosphorothioate. Researchers often use such modifications in the laboratory to make DNA resistant to nucleases (enzymes that snip DNA in certain locations) as a step toward gene and antisense therapies of human diseases.

Dedon said he and his co-workers were surprised to discover that a group of bacterial genes, known as the dnd gene cluster, gives bacteria the ability to employ the same modification on their own. “It turns out that nature has been using phosphorothioate modifications of DNA all along, and we just didn’t know about it,” he said.

He theorizes that the modification system might serve as either protection against foreign (unmodified) DNA, or as a “bookmark” to assist with transcription or replication of DNA.

Bacteria really are amazing. I am starting to read more about bacteria and virus so maybe I will post more on these topics over the next few months.

Related: Where Bacteria Get Their GenesBacteria parasite DNA found within DNA of hostFighting Bacteria by Blocking DNA Replication

Orcas Create Wave to Push Seal Off Ice

Pretty amazing footage. From Nature News, Unique orca hunting technique documented:

Ingrid Visser of the Orca Research Trust in New Zealand and her colleagues report on six further observations of the animals using group hunting behaviour to divide ice floes, push them into open water, and create waves to wash animals off them into their waiting jaws.

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Long-Eared Jerboa

photo of a long eared jerboa

Mysterious mammal caught on film, the link has videos too:

The long-eared jerboa, a tiny nocturnal mammal that is dwarfed by its enormous ears, can be found in deserts in Mongolia and China.

Until now, the creatures had proven extremely difficult to study, thanks to their minuscule size, nocturnal nature and the harsh desert environment that they inhabit.

“These creatures hop just like a kangaroo; it is amazing to watch. Little hairs on their feet, almost like snow shoes, allow them to jump along the sand,” he explained.

The expedition formed part of ZSL’s Edge programme, which focuses its efforts on conservation plans for animals that are both endangered and evolutionary distinctive. The long-eared jerboa is one of 10 species that the programme is looking at this year.

The Zoological Society of London Evolutionarily Distinct and Globally Endangered (EDGE) web site is a great source of all sorts of information. Including more on the Long-Earned Jerboa in the Gobi Desert. Great stuff, they have done a very nice job with their web site – even if they do force people to download the flash player for some material.

Genomics Course For College Freshman Supported by HHMI at 12 Universities

HHMI Selects 12 Institutions to Launch Nationwide Science Education Experiment

The Howard Hughes Medical Institute (HHMI) has selected 12 colleges and universities to participate in a nationwide genomics course that will involve first-year college students in authentic research. The new course is the first major initiative from HHMI’s Science Education Alliance, which seeks to enhance the teaching of science and inspire new generations of scientists.

In Fall 2008, first-year students at the six undergraduate institutions and six research-intensive institutions will take part in a year-long research course — the Phage Genomics Research Initiative – which is being developed by the Science Education Alliance (SEA). The SEA, headquartered at HHMI’s Janelia Farm Research Campus in Northern Virginia, will foster the development of a national network of scientists and educators who work collaboratively to develop and distribute new materials and methods to the education community.

HHMI is committing a total of $4 million over the first four years of the program.

Approximately 20 students at each institution will participate in the two-semester phage genomics research course, in which they will be taught to use sophisticated research techniques. Students will isolate bacterial viruses (phages) from their local soil, prepare the viral DNA for sequencing, and annotate and compare the sequenced genome. The goal is to immerse students in the process of doing science, and equip them with the critical thinking and communication skills necessary for successful research careers.

Related: $600 Million for Basic Biomedical Research$60 Million in Grants for UniversitiesImproving Engineering EducationHHMI Takes Big Open Access Step

Robot Water Striders

Scientists crack how insect bounces on water:

Walking on water may seem like a miracle to humans. But it is a humdrum achievement for the little water strider, which is able to bounce up and down on water too. Scientists have already solved the mystery of how their six slender, stilt-like legs evenly distribute their scant body weight over a relatively large area so that the “skin” formed by the surface tension of the water supports them, so four millimetre across dimples form under each foot as they skim about.

But scientists remained puzzled by how they could jump up and down upon the surface of water. Now a team in South Korea is about to report that it has at last explained the water strider’s baffling ability to leap onto water without sinking, in a forthcoming issue of the journal Langmuir, an achievement that could help further develop robots that can move about on lakes and reservoirs to monitor water quality, spy or explore.

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Scientists Cure Mice Of Sickle Cell Using Stem Cell Technique

Scientists Cure Mice Of Sickle Cell Using Stem Cell Technique

Using a recently developed technique for turning skin cells into stem cells, scientists have cured mice of sickle cell anemia — the first direct proof that the easily obtained cells can reverse an inherited, potentially fatal disease.

researchers also cautioned that aspects of the new approach will have to be changed before it can be tried in human patients. Most important, the technique depends on the use of gene-altered viruses that have the potential to trigger tumor growth. “The big issue is how to replace these viruses,” said Rudolf Jaenisch of the Whitehead Institute for Biomedical Research in Cambridge, Mass., who led the new work with co-worker Jacob Hanna and Tim M. Townes of the University of Alabama Schools of Medicine and Dentistry in Birmingham.

The researchers converted those skin cells into iPS cells by infecting them with viruses engineered to change the cells’ gene activity so they would resemble embryonic cells. Using DNA splicing techniques in those cells, the researchers then snipped out the small mutated stretches of DNA that cause sickle cell disease and filled those gaps with bits of DNA bearing the proper genetic code.

Next, the researchers treated the corrected iPS cells with another kind of virus — this time one designed to induce a genetic change that encouraged the cells to mature into bone marrow cells.

Finally, each mouse that gave up a few skin cells at the beginning of the experiment was given an infusion with the corrected marrow cells created from its own skin cells. Those cells set up permanent residence in the animals’ bones and began producing blood cells — the major function of marrow cells — and releasing them by the millions into the circulatory system.

But now the blood cells being produced were free of the sickle cell mutation.

Antibacterial Chemical Disrupts Hormone Activities

Antibacterial Chemical Disrupts Hormone Activities:

A new UC Davis study shows that a common antibacterial chemical added to bath soaps can alter hormonal activity in rats and in human cells in the laboratory — and does so by a previously unreported mechanism.

The findings come as an increasing number of studies — of both lab animals and humans — are revealing that some synthetic chemicals in household products can cause health problems by interfering with normal hormone action. Called endocrine disruptors, or endocrine disrupting substances (EDS), such chemicals have been linked in animal studies to a variety of problems, including cancer, reproductive failure and developmental anomalies.

The researchers found two key effects: In human cells in the laboratory, triclocarban increased gene expression that is normally regulated by testosterone. And when male rats were fed triclocarban, testosterone-dependent organs such as the prostate gland grew abnormally large. Also, the authors said their discovery that triclocarban increased hormone effects was new. All previous studies of endocrine disruptors had found that they generally act by blocking or decreasing hormone effects.

In their disclosure statement, the authors report that six of them have taken steps to patent their findings through the University of California.

Research paper Triclocarban enhances testosterone action: A new type of endocrine disruptor?.

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Ebola Outbreak in Uganda

Ebola is a truly scary virus. Read more on Ebola Hemorrhagic Fever at the CDC and WHO:

Ebola haemorrhagic fever (EHF) is one of the most virulent viral diseases known to humankind, causing death in 50-90% of all clinically ill cases. Several different species of Ebola virus have been identified. The Ebola virus is transmitted by direct contact with the blood, body fluids and tissues of infected persons. Transmission of the Ebola virus has also occurred by handling ill or dead infected chimpanzees.

Panic spreads as Uganda reports 101 Ebola cases:

Uganda has 101 suspected cases of Ebola fever and hundreds more people being closely monitored, officials said on Friday, as fear grew in Uganda and neighboring countries that the deadly virus might spread. Twenty two people have so far died of the fever

The outbreak, which started in August, has sparked panic amongst officials, health workers and the public, with the medical union calling on staff to refuse looking after patients unless they are issued proper protective gear. The affected region borders Democratic Republic of the Congo, whose Ebola river gave the virus its name after some of the first cases were recorded in its valley in 1976. The independent Daily Monitor said Congo had sealed its border with the district. Congolese officials denied this.

The last Ebola outbreak in Uganda was in 2000, when 425 people caught it and more than half died. Meanwhile, north of the Ebola-hit district, a separate epidemic of bubonic plague has infected 160 people and killed 19 since July, Health Ministry spokesman Paul Kabwa said.

I happen to be reading The Hot Zone right now. It is a non-fiction book which explores several Ebola virus outbreaks from 1967 to 1993 including one at surburban Washington, DC laboratory in 1989.

Related: What’s it like to work an Ebola outbreakReducing the Impact of a Flu PandemicWhat Are Viruses?Lethal Secrets of 1918 Flu Virus

Nanotube-producing Bacteria Show Manufacturing Promise

Genus Shewanella

Nanotube-producing Bacteria Show Manufacturing Promise:

The photoactive arsenic-sulfide nanotubes produced by the bacteria behave as metals with electrical and photoconductive properties. The researchers report that these properties may also provide novel functionality for the next generation of semiconductors in nano- and opto-electronic devices.

In a process that is not yet fully understood, the Shewanella bacterium secretes polysacarides that seem to produce the template for the arsenic sulfide nanotubes, Myung explained. The practical significance of this technique would be much greater if a bacterial species were identified that could produce nanotubes of cadmium sulfide or other superior semiconductor materials, he added.

“This is just a first step that points the way to future investigation,” he said. “Each species of Shewanella might have individual implications for manufacturing properties.”

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