Category Archives: Research

Foreign Cells Outnumber Human Cells in Our Bodies

This is one of those area I find very interesting: People Have More Bacterial Cells than Human Cells. Colin Nickerson has written an interesting article on the topic: Of microbes and men

Scientists estimate that 90 percent of the cells contained in the human body belong to nonhuman organisms – mostly bacteria, but also a smattering of fungi and other eensy entities. Some 100 trillion microbes nestle in niches from our teeth to our toes.

But what’s setting science on its heels these days is not the boggling numbers of bugs so much as the budding recognition that they are much more than casual hitchhikers capable of causing disease. They may be so essential to well-being that humans couldn’t live without them.

In this emerging view, humans and their microbes – or, as some biologists playfully put it, microbes and their attached humans – have evolved together to form an extraordinarily complex ecosystem.

The understanding of the complex interaction is something I came to through reading on the overuse of antibiotics. And the more I read the more interesting it gets.

“We can’t take nutrition properly without bacteria. We can’t fight bad germs without good germs,” he said. “It may turn out that secretions from bacteria affect not only long-term health, but hour-by-hour moods – could a person’s happiness depend on his or her bugs? It’s possible. Our existences are so incredibly intertwined.”

However, in the opinion of some researchers, this strange union may be headed for trouble because of profligate use of antibiotics and antiseptic lifestyles that deter the transfer of vital strains of bacteria that have swarmed in our systems at least since early humans ventured out of Africa.

Incident in LHC Sector 34

Incident in LHC sector 34

During commissioning (without beam) of the final LHC sector (sector 34) at high current for operation at 5 TeV, an incident occurred at mid-day on Friday 19 September resulting in a large helium leak into the tunnel. Preliminary investigations indicate that the most likely cause of the problem was a faulty electrical connection between two magnets, which probably melted at high current leading to mechanical failure. CERN ’s strict safety regulations ensured that at no time was there any risk to people.

A full investigation is underway, but it is already clear that the sector will have to be warmed up for repairs to take place. This implies a minimum of two months down time for LHC operation. For the same fault, not uncommon in a normally conducting machine, the repair time would be a matter of days.

Mars Rover Continues Exploration

Mars Rover

Ageing Mars rover to embark on epic two-year journey

The ageing but intrepid Mars rover Opportunity is set to embark on a two-year mission it may never complete – a seven-mile journey to a crater far bigger than one it has called home for two years, NASA have revealed.

The golf-cart-sized robot with a wobbly front wheel climbed out of Victoria crater earlier this month and scientists at NASA’s Jet Propulsion Laboratory in California are steering the probe toward a crater more than 20 times larger, dubbed Endeavor.
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There are also small rocks strewn about the surface on the route, which appear to have been dug up by meteor impacts farther away. This will give scientists the chance to examine material that otherwise would be too deep to reach. Opportunity still has the use of all six of its wheels, though the right front wheel can no longer be steered.

Seventh-grader’s Solar Cell Research

photo of William Yuan

Seventh-grader shines with solar cell research

Yuan worked on his project for the past two years with the encouragement of his science teacher Susan Duncan; support of his parents Gang Yuan and Zhiming Mei; and counsel of professional mentors Professor Chunfei Li of Portland State University’s Center for Nanofabrication and Electron Microscopy, Fred Li of Applied Materials Inc. and Professor Shaofan Li of the Department of Civil Engineering at the University of California – Berkeley.

“He is our youngest fellow in science that we’ve ever had,” Moessner said. “He is really spectacular. “His project will really make a difference in advancing the technology of solar cells. You would never know he’s 12 looking at the quality of his work.”

Beaverton boy lauded for solar cell invention

there have been many questions about the research by William Yuan. Some have even questioned whether he copied the research of others and claimed it as his own. That is far from the case. Yuan fully documented all of his sources and never tried to imply that he invented the 3D solar cell. He did create a new type of 3D solar cell that works for visible and UV light

William Yuan was awarded a 2008 Davidson Fellow award

In his project, “High Efficient 3-Dimensional Nanotube Solar Cell for Visible and UV Light,” William invented a novel solar panel that enables light absorption from visible to ultraviolet light. He designed carbon nanotubes to overcome the barriers of electron movement, doubling the light-electricity conversion efficiency. William also developed a model for solar towers and a computer program to simulate and optimize the tower parameters. His optimized design provides 500 times more light absorption than commercially-available solar cells and nine times more than the cutting-edge, three-dimensional solar cell.

Tardigrades In Space (TARDIS)

Research showing that Tardigrades (Water Bears) can survive in space without protection has been in the news lately. There is a blog with a few posts from the research team (only from last year unfortunately): Tardigrades In Space (TARDIS). They chose not to publish the research in an open access fashion, unfortunately.

Tiny Critters Survive Space

These small, segmented animals not only survived a 12-day orbital expedition, some members of the community felled by solar radiation actually recovered upon their return to Earth.

“How these animals were capable of reviving their body … remains a mystery,” said lead researcher Ingemar JÃ¶nsson, with Sweden’s Kristianstad University, who writes about the discovery in this week’s issue of Current Biology.
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Most of the 3,000 creatures not only survived, but they went on to reproduce once they came back to Earth. About 12 percent of the animals exposed to ultraviolet radiation revived after being put back in water, a puzzling find since researchers presume the sterilizing rays broke down the tardigrades’ DNA. “This type of radiation cuts the DNA strand effectively in most organisms”

MIT International Science and Technology Initiatives

MIT is providing seed funding to faculty to encourage global research. The seed funds cover a variety of expenses, including exploratory field research, workshop materials and instrument costs. Each proposal is eligible for up to $20,000 in funding. Research and collaboration can take place anywhere in the world on any topic. For all projects, up to $10,000 in additional funding is available for undergraduate and graduate student participation.

MISTI country programs also offer five country-specific seed funds for collaborative research involving France, India, Italy, Japan or Spain.

This is a good use of their huge endowment. So is the Open Courseware initiative. As is their elimination of tuition for those with families earning less than $75,000. Good for MIT.

Best Research University Rankings – 2008

The annual ranking of research Universities are available from Shanghai’s Jiao Tong University. The methodology values publications and faculty awards which provides a better ranking of research (rather than teaching). Results from the 2008 rankings of Top 500 Universities worldwide, country representation of the top schools:

location	Top 100	% of World Population	% of World GDP	% of top 500
USA	54	4.6%	27.2%	31.6%
United Kingdom	11	0.9	4.9	8.3
Germany	6	1.3	6.0	8.0
Japan	4	2.0	9.0	6.2
Canada	4	0.5	2.6	4.2
Sweden	4	0.1	0.8	2.2
France	3	0.8	4.6	4.6
Switzerland	3	0.1	0.8	1.6
Australia	3	0.3	1.6	3.0
Netherlands	2	0.2	1.4	2.4
Denmark	2	0.1	0.6	0.8
Finland	1	0.1	0.4	1.2
Norway	1	0.1	0.7	0.8
Israel	1	0.1	0.3	1.2
Russia	1	2.2	2.0	0.4
China		20.5	6.6	6.0
India		17.0	1.9	0.4

There is little change in most of the data from last year, which I think is a good sign, it wouldn’t make much sense to have radical shifts over a year in these rankings. Japan lost 2 schools in the top 100, France lost 1. Denmark (Aarhus University) and Australia (University of Sydney) gained 1. Last year there was a tie so there were 101 schools in the top 100.

The most dramatic data I noticed is China’s number of top 500 schools went from 14 to 30, which made me a bit skeptical of what caused that quick change. Looking more closely last year they reported the China top 500 totals as (China 14, China-Taiwan 6 and China-Hong Kong 5). That still gives them an impressive gain of 5 schools.

Singapore has 1 in the 102-151 range. Taiwan has 1 ranked in the 152-200 range, as do Mexico, Korea and Brazil. China has 9 in the 201-302 range (including 3 in Hong Kong). India has 2 in the 303-401 range.

University of Wisconsin – Madison is 17th again 🙂 My father taught there while I grew up.
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National Museum of the American Indian Photos

photo of the National Museum of the American Indian, Washington DC

Photo of the National Museum of the American Indian in Washington DC by John Hunter. The museum is the newest addition to the collection of Smithsonian museums on the Mall. The second photo is of a Mayan calendar. Photos can be used with attribution.

8 Percent of the Human Genome is Old Virus Genes

In Our Genes, Old Fossils Take On New Roles

It turns out that about 8 percent of the human genome is made up of viruses that once attacked our ancestors. The viruses lost. What remains are the molecular equivalents of mounted trophies, insects preserved in genomic amber, DNA fossils.

The thousands of human endogenous retroviruses, or HERVs, sketch a history of rough times during the 550 million years of vertebrate evolution. The best-preserved one, HERV-K113, probably arrived less than 200,000 years ago, long after human beings and chimpanzees diverged from a common ancestor.

But these retroviruses are more than just curiosities. They are some of the most important enemies we ever had. They helped mold the immune system that is one of the evolutionary marvels of life on Earth.

I must say there is tons of amazing stuff I learn about but I still find retroviruses amazing.

Autonomous Helicopters Teach Themselves to Fly

photo of Stanford Autonomous Learning Helicopters

Stanford’s “autonomous” helicopters teach themselves to fly

Stanford computer scientists have developed an artificial intelligence system that enables robotic helicopters to teach themselves to fly difficult stunts by watching other helicopters perform the same maneuvers.
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The dazzling airshow is an important demonstration of “apprenticeship learning,” in which robots learn by observing an expert, rather than by having software engineers peck away at their keyboards in an attempt to write instructions from scratch.
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It might seem that an autonomous helicopter could fly stunts by simply replaying the exact finger movements of an expert pilot using the joy sticks on the helicopter’s remote controller. That approach, however, is doomed to failure because of uncontrollable variables such as gusting winds.