Category Archives: Science

Scientific Illiteracy Leaves Many at Risk in Making Health Care Judgements

Scientific literacy is important for many reasons and that importance has increased greatly over the last century. Medical research is often difficult to interpret. Often various studies seem to contradict each other. Often the conclusions that are drawn are far too broad (especially as the research conclusions are passed on and people hear of them overly simplified ways).

Many health care options are not obviously all good, or all bad, but instead a mix of benefits and risks, both of which include interactions with the individuals makeup. So we often see contradictory (and seemingly contradictory) advice. Without a level of scientific literacy it is very difficult for people to know how to react to medical advice.

We have numerous posts on the scientific inquiry process showing that acquiring scientific knowledge is complex and can be quite confusing in many instances. While understanding things are often less clear cut than they are presented it is still true that most often strategies for healthy living have far better practices that will provide far better results than alternatives.

The scientific illiteracy that has some think because their are risks no matter what is done that means there is no evidence some alternatives are far superior is very dangerous. As you can see in action now with those that risk their and others lives and health by doing things like not vaccinating their children, or driving when drunk, or driving when talking on a cell phone.

Without a scientifically literate society even completely obvious measures like not using antibiotics on viral infections are ignored.

Researchers Work to Protect Bats Against Deadly Disease

Researchers work to protect Wisconsin bats against deadly disease

Redell, who studies bats for the Department of Natural Resources, lives every day now with the threat of a disease called white-nose syndrome hanging over his head. The disease, though not yet in Wisconsin, has killed more than 90 percent of the cave bats in Eastern states such as New York and Vermont. Experts predict it could make its way to Wisconsin, with its eight species and hundreds of thousands of bats, in as little as two years.
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One female little brown bat – with a body less than the length of your thumb – can eat its body weight in insects in one evening, Redell said. Such is the insect-hunting prowess of the bats that they are thought to save farmers billions of dollars in crop losses, according to Sheryl L. Ducummon, with Bat Conservation International.

In a recent scientific article on the ecological and economic importance of bats, Ducummon reported that, in one summer, the 150 bats in an average colony of big brown bats can conservatively eat 38,000 cucumber beetles, which attack corn and other farm crops. Damage from the beetle and their larvae cost corn farmers as much as $1 billion a year.

The loss of such an insect-eating force could be devastating, Redell said. The approximate 1 million bats that have already died of white-nose syndrome in the last three years on the East Coast would have eaten 700,000 tons of insects were they still hunting the night skies, he said.

Bats perform other important tasks, too. Several Western species serve crucial roles as pollinators for desert plants such as agave and as seed dispersers for dozens of species of cacti.
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“I mean, this is like a mouse that flies, but it has the predatory capabilities of a polar bear,” Blehert said. “They are physically adapted to command the night sky. You’re talking about a little thing with a body less than half the size of your thumb whose heartbeat can get up to 1,000 beats a minute when they are flying but that can slow when they are hibernating in the winter to 4 beats a minute. And they live 20 to 25 years!”

Bats really are amazing and very valuable animals.

The Value of Displaying Data Well

Anscombe’s quartet: all four sets are identical when examined statistically, but vary considerably when graphed. Image via Wikipedia.

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Anscombe’s quartet comprises four datasets that have identical simple statistical properties, yet are revealed to be very different when inspected graphically. Each dataset consists of eleven (x,y) points. They were constructed in 1973 by the statistician F.J. Anscombe to demonstrate the importance of graphing data before analyzing it, and of the effect of outliers on the statistical properties of a dataset.

Of course we also have to be careful of drawing incorrect conclusions from visual displays.

For all four datasets:

Property	Value
Mean of each x variable	9.0
Variance of each x variable	10.0
Mean of each y variable	7.5
Variance of each y variable	3.75
Correlation between each x and y variable	0.816
Linear regression line	$y = 3 + 0.5 x$

Edward Tufte uses the quartet to emphasize the importance of looking at one’s data before analyzing it in the first page of the first chapter of his book, The Visual Display of Quantitative Information.

Here Comes Science by They Might Be Giants

They Might Be Giants creates great music and has moved into creating music aimed at kids, of any age, over the last few years. They are releasing a new Album and animated DVD Here Comes Science, is being released tomorrow. Their music is both enjoyable to listen to and educational, something that is often attempted but rarely done as successfully as they do.

The release include the following songs and videos:

1. Science Is Real
2. Meet the Elements
3. I Am a Paleontologist w/Danny Weinkauf
4. The Bloodmobile
5. Electric Car w/Robin Goldwasser
6. My Brother the Ape
7. What Is a Shooting Star?
8. How Many Planets?
9. Why Does the Sun Shine?
Continue reading →

Experimenting Social Network

Social media is definitely a fad filled with lots of ways to waste time. It also does have real value, ways to connect to things people care about and wish to focus on. Reddit is a good site for finding interesting resources online. Sub-reddits are topical areas within Reddit (I have set up management and investing sub-reddits). A new experiment subreddit looks very interesting:

Each experiment will go through a few threads. The first step will be a query for experimental methods. Someone will present a problem or piece of information they want to find out, and then others will suggest methods. Once this is agreed upon, it will be carried out, and a second thread will be posted detailing the method and providing a place to post results via the comments. Then, a third thread can be made to discuss the results. Having more than one thread for every experiment will make things more accessible and easier to sort.

Don’t research ways other people have experimentally determined these things. Submit original ideas to the experimental design thread. Try to come up with a novel way to discover things, but don’t be completely limited by this suggestion. This is chiefly about rediscovery, not repeating someone else’s experiment, but sometimes there’s fun and merit in that as well.

I have joined. You can go to Reddit and join this subreddit to see experiences with experimenting to learn about the world around us.

Atomic Force Microscopy Image of a Molecule

The delicate inner structure of a pentacene molecule imaged with an atomic force microscope. For the first time, scientists achieved a resolution that revealed the chemical structure of a molecule. The hexagonal shapes of the five carbon rings in the pentacene molecule are clearly resolved. Even the positions of the hydrogen atoms around the carbon rings can be deduced from the image. (Pixels correspond to actual data points). Image courtesy of IBM Research – Zurich

IBM scientists have been able to image the “anatomy” — or chemical structure — inside a molecule with unprecedented resolution. “Though not an exact comparison, if you think about how a doctor uses an x-ray to image bones and organs inside the human body, we are using the atomic force microscope to image the atomic structures that are the backbones of individual molecules,” said IBM Researcher Gerhard Meyer. “Scanning probe techniques offer amazing potential for prototyping complex functional structures and for tailoring and studying their electronic and chemical properties on the atomic scale.”

The AFM uses a sharp metal tip to measure the tiny forces between the tip and the sample, such as a molecule, to create an image. In the present experiments, the molecule investigated was pentacene. Pentacene is an oblong organic molecule consisting of 22 carbon atoms and 14 hydrogen atoms measuring 1.4 nanometers in length. The spacing between neighboring carbon atoms is only 0.14 nanometers—roughly 1 million times smaller then the diameter of a grain of sand. In the experimental image, the hexagonal shapes of the five carbon rings as well as the carbon atoms in the molecule are clearly resolved. Even the positions of the hydrogen atoms of the molecule can be deduced from the image.

Read full press release: IBM Scientists First to Image the “Anatomy” of a Molecule
Continue reading →

Physics from Universe to Multiverse

2005 video of Dr. Michio Kaku speaking on BBC on physics from Universe to Multiverse.

Unfortunately BBC leaders decided to hide this from the world and removed the video. Maybe scientists should stop talking to organizations won’t share the output with the world.

What is a Molecule?

One of the things I keep meaning to do more of with this blog is provide some post on basic science concepts that may help raise scientific literacy. Some of these will be pretty obvious but even reminders on some facts you know can sometimes help.

What is a molecule?

A molecule is the smallest particle of a compound that has all the chemical properties of that compound. Molecules are made up of two or more atoms, either of the same element or of two or more different elements. The example of molecules are water (H₂O) and carbon dioxide (CO₂) and molecular nitrogen (N₂).

Organic molecules contain Carbon, for example, Methane CH₄). The original definition of “organic” chemistry came from the misconception that organic compounds were always related to life processes.

A few types of compounds such as carbonates, simple oxides of carbon and cyanides, as well as the allotropes of carbon, are considered inorganic. The division between “organic” and “inorganic” carbon compounds while “useful in organizing the vast subject of chemistry…is somewhat arbitrary”

Ionic compounds, such as common salt, are made up not of molecules, but of ions arranged in a crystalline structure. Unlike ions, molecules carry no net electrical charge.

Battery Breakthrough

New battery could change world

Inside Ceramatec’s wonder battery is a chunk of solid sodium metal mated to a sulphur compound by an extraordinary, paper-thin ceramic membrane. The membrane conducts ions — electrically charged particles — back and forth to generate a current. The company calculates that the battery will cram 20 to 40 kilowatt hours of energy into a package about the size of a refrigerator, and operate below 90 degrees C.

This may not startle you, but it should. It’s amazing. The most energy-dense batteries available today are huge bottles of super-hot molten sodium, swirling around at 600 degrees or so. At that temperature the material is highly conductive of electricity but it’s both toxic and corrosive. You wouldn’t want your kids around one of these.

The essence of Ceramatec‘s breakthrough is that high energy density (a lot of juice) can be achieved safely at normal temperatures and with solid components, not hot liquid.

Ceramatec says its new generation of battery would deliver a continuous flow of 5 kilowatts of electricity over four hours, with 3,650 daily discharge/recharge cycles over 10 years. With the batteries expected to sell in the neighborhood of $2,000, that translates to less than 3 cents per kilowatt hour over the battery’s life. Conventional power from the grid typically costs in the neighborhood of 8 cents per kilowatt hour.
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A small three-bedroom home in Provo might average, say, 18 kWh of electric consumption per day in the summer — that’s 1,000 watts for 18 hours. A much larger home, say five bedrooms in the Grandview area, might average 80 kWh, according to Provo Power.;Either way, a supplement of 20 to 40 kWh per day is substantial. If you could produce that much power in a day — for example through solar cells on the roof — your power bills would plummet.

Ceramatec’s battery breakthrough now makes that possible.

Clyde Shepherd of Alpine is floored by the prospect. He recently installed the second of two windmills on his property that are each rated at 2.4 kilowatts continuous output. He’s searching for a battery system that can capture and store some of that for later use when it’s calm outside, but he hasn’t found a good solution.

“This changes the whole scope of things and would have a major impact on what we’re trying to do,” Shepherd said. “Something that would provide 20 kilowatts would put us near 100 percent of what we would need to be completely independent. It would save literally thousands of dollars a year.”

Very interesting stuff. If they can take it from the lab to production this could be a great thing, I would like one.

HHMI Science Internships

Undergraduate Scholars Live the Scientific Life at Janelia Farm

With Janelia Farm lab heads as their mentors, the students have delved into projects that include identifying the neurons that control feeding behavior in fruit flies, designing better labeling molecules for use with sophisticated microscopy techniques, increasing the longevity of dragonflies, and developing computer programs for automated image analysis. The Janelia environment, they said, provides a unique opportunity to focus intently on research.
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The summer program offers students more than just hands-on experience in the lab – it aims to expose them to a more complete picture of what it is to work and think as a scientist does. An important component of the program is a weekly seminar in which students present their work to one another and field questions. Likewise, scholars are encouraged to attend the campus’s frequent seminars, conferences, and journal clubs, for exposure to research other their own.

For Gloria Wu, who is majoring in biochemistry at the University of California, Berkeley, the interdisciplinary nature of research at Janelia Farm and the diversity of backgrounds among her fellow scholars were important assets. “A lot of students are coming from math or computer science backgrounds, and that really stimulates a lot of discussion between us, so we can see other approaches to solving biological questions. That is something really wonderful about this program,” she said.