Category Archives: Science

DoE: Minority Science and Engineering Improvement Program

The United States Department of Education’s Minority Science and Engineering Improvement Program (MSEIP) provides funds to schools to provide awards to students. 20 new awards (average value of $139,000) were awarded this year. That brings total funding this year to 71 awards (50 continue from previous years). Institutions recieving funds include: Clark Atlanta University, Rust College, New Mexico State University, Spelman College, Virginia State University and the College of Menominee Nation.

The program is designed to effect long-range improvement in science at predominantly minority and engineering education programs to increase the participation of underrepresented ethnic minorities, particularly minority women, into scientific and technological careers.

Wiley College, one of the new recipients, aims to increase the number of science majors, especially in the fields of biology and chemistry. A key feature of this grant is the creation of a high school science competition that will allow local and regional high school students to visit the campus and compete in a variety of scientific events.

This event will bring five area high schools together to compete in ten scientific events based on biology, chemistry, mathematics and physics. Individual first-place winners will be given scholarships to Wiley College. There will also be an overall grand champion awarded. This event will allow high school students to experience life at Wiley College and the possibilities of a career in science.

“This event not only gives students a financial reason to enroll at Wiley, but also allows them to become familiar with the campus and its faculty and students, said Dr. Shumate. “This grant also furthers a connection between Wiley and both the University of Texas at Dallas and the University of Arkansas, allowing current Wiley students to attend these schools in the summer for biomedical research.”

Wiley hosts HS science competition Saturday

Related: NSF Undergraduate STEM ScholarshipsLoan Forgiveness Program for Engineering StudentsA Life-changing GiftScience and Engineering Scholarships and Fellowships Directoryscience scholarships posts

Looking for Signs of Dark Matter Over Antarctica

Dark Matter Proof Found Over Antarctica?

High-energy electrons captured over Antarctica could reveal the presence of a nearby but mysterious astrophysical object that’s bombarding Earth with cosmic rays, researchers say. Or the electrons may be the long-awaited physical evidence of elusive dark matter.

Either way, the unusual particles are exciting for astrophysicists, who say they could someday confirm or deny decades of unproven theories. “In the first case, we have now seen for the first time a nearby source of cosmic rays.

Cosmic rays are not beams per se but are any protons, electrons, and other subatomic particles that careen toward Earth from a variety of sources, including the supernova explosions that mark the deaths of stars.

Most of the cosmic electrons that reach Earth are low-energy, because the highest-energy ones fizzle the fastest and don’t last long enough to get here.

Related: Dark CosmosFinding Dark MatterExplaining the Missing AntimatterMore Mysterious Space PhenomenonCosmology Questions Answered

Scientists With Lots of Monitors Onboard Ship

photo of computer monitors onboard ship

Fun blog by Linds, a geophysicist, with fun name and tagline: PhD = Pretty huge Dork There’s no crying in grad school! I enjoy including some posts on scientists at work (and plan on trying to intentionally do more of that). The photo shows her office onboard ship – pretty impressive. I thought this monitor was cool.

The boat is a steel monster about 400 feet long. There’s three decks, with cabins, the galley and mess hall, a few different labs, a movie room, reading room and a weight room with white padded walls. It’s all very “Life Aquatic“, if you get the reference. [those that don’t follow the link its a crazy movie – John]

We have been in transit for the past three days, getting our computers and systems up and running. We arrive at our first deployment spot tomorrow morning at 5:30 am. That is when we’ll put our first ocean bottom seismometer (OBS) down. The OBS itself is a sphere about 16 inches in diameter made of inch thick glass–these suckers are heavy! It’s vacuum sealed with the instrumentation inside and attached to an anchor. When we are done with the survey, the sphere is timed to detach from the anchor and it’ll float to the surface of the water. Our boat will pull up alongside it and we’ll scoop it out with a net and crane.

woke up today at 3am to get ready for my first watch. We definitely have the worst seas that we have had so far. We are definitely pitching and rolling out here! We deployed our first OBS at 5am and are doing about 1 instrument/hr for the next 24 hours.

Those snippets are from various posts on the blog. Another from earlier:

But there is recent good news: that lone female professor (who is an amazing researcher and is highly respected in the field, chairs many committees both nationally and within the department and was president of the Geological Society of America in the 90’s) has been named the new department chair. I think this move is important in encouraging talented women scientists to apply for positions within the department and shows dedication on the part of the higher-ups to highlighting ‘diversity’ as a priority.

Related: Giant Star Fish and More in AntarcticaBeloit College: Girls and Women in ScienceA Career in Computer ProgrammingDiversity in Science and EngineeringSo, You Want to be an Astrophysicist?Dr. Tara Smith

How Bleach Kills Bacteria

Developed more than 200 years ago and found in households around the world, chlorine bleach is among the most widely used disinfectants, yet scientists never have understood exactly how the familiar product kills bacteria. In fact, Hypochlorite, the active ingredient of household bleach, attacks essential bacterial proteins, ultimately killing the bugs.

“As so often happens in science, we did not set out to address this question,” said Jakob, an associate professor of molecular, cellular and developmental biology. “But when we stumbled on the answer midway through a different project, we were all very excited.”

Jakob and her team were studying a bacterial protein known as heat shock protein 33 (Hsp33), which is classified as a molecular chaperone. The main job of chaperones is to protect proteins from unfavorable interactions, a function that’s particularly important when cells are under conditions of stress, such as the high temperatures that result from fever.

“At high temperatures, proteins begin to lose their three-dimensional molecular structure and start to clump together and form large, insoluble aggregates, just like when you boil an egg,” said lead author Jeannette Winter, who was a postdoctoral fellow in Jakob’s lab. And like eggs, which once boiled never turn liquid again, aggregated proteins usually remain insoluble, and the stressed cells eventually die.

Jakob and her research team figured out that bleach and high temperatures have very similar effects on proteins. Just like heat, the hypochlorite in bleach causes proteins to lose their structure and form large aggregates.

These findings are not only important for understanding how bleach keeps our kitchen countertops sanitary, but they may lead to insights into how we fight off bacterial infections. Our own immune cells produce significant amounts of hypochlorite as a first line of defense to kill invading microorganisms. Unfortunately, hypochlorite damages not just bacterial cells, but ours as well. It is the uncontrolled production of hypochlorite acid that is thought to cause tissue damage at sites of chronic inflammation.

How did studying the protein Hsp33 lead to the bleach discovery? The researchers learned that hypochlorite, rather than damaging Hsp33 as it does most proteins, actually revs up the molecular chaperone. When bacteria encounter the disinfectant, Hsp33 jumps into action to protect bacterial proteins against bleach-induced aggregation.

“With Hsp33, bacteria have evolved a very clever system that directly senses the insult, responds to it and increases the bacteria’s resistance to bleach,” Jakob said.

Related: University of Michigan Press releaseHow do antibiotics kill bacteria?NPR podcast on the storyWhy ‘Licking Your Wounds’ WorksResearchers Learn What Sparks Plant Growth

New Supercomputer for Science Research

photo of Jaguar Supercomputer

“Jaguar is one of science’s newest and most formidable tools for advancement in science and engineering,” said Dr. Raymond L. Orbach, DOE.s Under Secretary for Science. The new capability will be added to resources available to science and engineering researchers in the USA.

80 percent of the Leadership Computing Facility resources are allocated through the United States Department of Energy’s Innovative and Novel Computational Impact on Theory and Experiment (INCITE) program, a competitively selected, peer reviewed process open to researchers from universities, industry, government and non-profit organizations. Scientists and engineers at DOE’s Oak Ridge National Laboratory are finding an increasing variety of uses for the Cray XT system. A recent report identified 10 breakthroughs in U.S. computational science during the past year. Six of the breakthroughs involved research conducted with the Jaguar supercomputer, including a first-of-its-kind simulation of combustion processes that will be used to design more efficient automobile engines. Read the computational science report. Read full press release.

ORNL’s Jaguar fastest computer for science research

Jaguar will be used for studies of global climate change, as well as development of alternative energy sources and other types of scientific problem-solving that previously could not be attempted.

Zacharia said ORNL’s Jaguar was upgraded by adding 200 Cray XT5 cabinets – loaded with AMD quadcore processors and Cray SeaStar interconnects – to the computer’s existing 84 Cray XT4 cabinets. The combined machine resulted in the new standard for computational science.

The peak operating speed is apparently just below that of Los Alamos National Laboratory’s IBM Roadrunner system, which is designed for 1.7 petaflops. But the Jaguar reportedly has triple the memory of Roadrunner and much broader research potential.

Because the Jaguar has come online sooner than expected, Zacharia said an alert was sent to top U.S. scientists inviting them to apply for early access to the Oak Ridge computer. Their scientific proposals will be reviewed on an accelerated timetable, he said.

The peak capability of 1.64 petaflops is attributed to 1.384 petaflops from the new Cray XT5, combined with 0.266 petaflops from the existing Cray XT4 system, Zacharia said.

How fast is a quadrillion calculations per second? “One way to understand the speed is by analogy,” Zacharia said recently. “It would take the entire population of the Earth (more than 6 billion people), each of us working a handheld calculator at the rate of one second per calculation, more than 460 years to do what Jaguar at a quadrillion can do in one day.”

Related: National Center for Computational Sciences at ORNL site on Jaguar (photo from here) – Open Science Computer GridDonald Knuth, Computer ScientistSaving FermilabNew Approach Builds Better Proteins Inside a ComputerDoes the Data Deluge Make the Scientific Method Obsolete?

Google Flu Leading Indicator

Google Flu Trends

During the 2007-2008 flu season, an early version of Google Flu Trends was used to share results each week with the Epidemiology and Prevention Branch of the Influenza Division at CDC. Across each of the nine surveillance regions of the United States, we were able to accurately estimate current flu levels one to two weeks faster than published CDC reports.

So why bother with estimates from aggregated search queries? It turns out that traditional flu surveillance systems take 1-2 weeks to collect and release surveillance data, but Google search queries can be automatically counted very quickly. By making our flu estimates available each day, Google Flu Trends may provide an early-warning system for outbreaks of influenza.

For epidemiologists, this is an exciting development, because early detection of a disease outbreak can reduce the number of people affected. If a new strain of influenza virus emerges under certain conditions, a pandemic could emerge and cause millions of deaths (as happened, for example, in 1918). Our up-to-date influenza estimates may enable public health officials and health professionals to better respond to seasonal epidemics and — though we hope never to find out — pandemics.

This is an interesting example of finding new ways to quickly access what is happening in the world. Google must be doing significant amounts of similar things to see how usage patterns can server as a leading indicator.

Related: Study Shows Why the Flu Likes WinterTracking flu trendsReducing the Impact of a Flu PandemicData Deluge Aids Scientists

Magnetic Portals Connect Sun and Earth

Magnetic Portals Connect Sun and Earth by Dr. Tony Phillips

During the time it takes you to read this article, something will happen high overhead that until recently many scientists didn’t believe in. A magnetic portal will open, linking Earth to the sun 93 million miles away. Tons of high-energy particles may flow through the opening before it closes again, around the time you reach the end of the page.

“It’s called a flux transfer event or ‘FTE,'” says space physicist David Sibeck of the Goddard Space Flight Center. “Ten years ago I was pretty sure they didn’t exist, but now the evidence is incontrovertible.”

Researchers have long known that the Earth and sun must be connected. Earth’s magnetosphere (the magnetic bubble that surrounds our planet) is filled with particles from the sun that arrive via the solar wind and penetrate the planet’s magnetic defenses. They enter by following magnetic field lines that can be traced from terra firma all the way back to the sun’s atmosphere.

“We used to think the connection was permanent and that solar wind could trickle into the near-Earth environment anytime the wind was active,” says Sibeck. “We were wrong. The connections are not steady at all. They are often brief, bursty and very dynamic.”

On the dayside of Earth (the side closest to the sun), Earth’s magnetic field presses against the sun’s magnetic field. Approximately every eight minutes, the two fields briefly merge or “reconnect,” forming a portal through which particles can flow. The portal takes the form of a magnetic cylinder about as wide as Earth.

See more posts on scientific inquiry and scientists advancing our understanding of how things work.

Related: Solar StormsA Solar ProminenceBoiling Water in SpaceMagnetic Movie

Static Stretching Decreases Muscle Strength

Stretching: The Truth

Researchers now believe that some of the more entrenched elements of many athletes’ warm-up regimens are not only a waste of time but actually bad for you. The old presumption that holding a stretch for 20 to 30 seconds – known as static stretching – primes muscles for a workout is dead wrong. It actually weakens them.

A well-designed warm-up starts by increasing body heat and blood flow.

To raise the body’s temperature, a warm-up must begin with aerobic activity, usually light jogging. Most coaches and athletes have known this for years.

Athletes who need to move rapidly in different directions, like soccer, tennis or basketball players, should do dynamic stretches that involve many parts of the body. “Spider-Man” is a particularly good drill: drop onto all fours and crawl the width of the court, as if you were climbing a wall.

Related: Scientific MisinformationResearch on Reducing Hamstring InjuriesExercise to Reduce Fatigue

Toward a More Open Scientific Culture

Michael Nielsen wrote a great post, The Future of Science, which is also the topic of a book he is writing. He discusses how scientific advancement has often been delayed as those making discoveries did not share them openly. And how 300 years ago scientific journals and reward systems created ways for scientists to be rewarded for publication. And he continues with the need for the process to again change and promote more open sharing of scientific knowledge, which I agree with and have written about previously: Publishers Continue to Fight Open Access to Science, Science Journal Publishers Stay Stupid, The Future of Scholarly Publication, etc..

Why were Hooke, Newton, and their contemporaries so secretive? In fact, up until this time discoveries were routinely kept secret.

This cultural transition was just beginning in the time of Hooke and Newton, but a little over a century later the great physicist Michael Faraday could advise a younger colleague to “Work. Finish. Publish.” The culture of science had changed so that a discovery not published in a scientific journal was not truly complete. Today, when a scientist applies for a job, the most important part of the application is their published scientific papers.

This has been a great advance. Now we need to continue that advance to use the internet to make that publication open and increase the advantage of shared knowledge to society.

The adoption of the journal system was achieved by subsidizing scientists who published their discoveries in journals. This same subsidy now inhibits the adoption of more effective technologies, because it continues to incentivize scientists to share their work in conventional journals, and not in more modern media.

This means: making many more types of content available than just scientific papers; allowing creative reuse and modification of existing work through more open licensing and community norms; making all information not just human readable but also machine readable; providing open APIs to enable the building of additional services on top of the scientific literature, and possibly even multiple layers of increasingly powerful services. Such extreme openness is the ultimate expression of the idea that others may build upon and extend the work of individual scientists in ways they themselves would never have conceived.

To create an open scientific culture that embraces new online tools, two challenging tasks must be achieved: (1) build superb online tools; and (2) cause the cultural changes necessary for those tools to be accepted.

I agree we need to take advantage of the new possibilities to advance the practice of science. His full post is well worth reading.

Related: Open Source: The Scientific Model Applied to ProgrammingThe Future of Science is Open by Bill HookerDinosaurs Fight Against Open ScienceOpen Access Journal WarsI Support the Public Library of ScienceDoes the Data Deluge Make the Scientific Method Obsolete?

Extra-Universal Matter

Unknown “Structures” Tugging at Universe, Study Says

The presence of the extra-universal matter suggests that our universe is part of something bigger – a multiverse – and that whatever is out there is very different from the universe we know, according to study leader Alexander Kashlinsky, an astrophysicist at NASA’s Goddard Space Flight Center in Maryland.

The theory could rewrite the laws of physics. Current models say the known, or visible, universe – which extends as far as light could have traveled since the big bang – is essentially the same as the rest of space-time (the three dimensions of space plus time).

Not everyone is ready to rewrite physics just yet. Astrophysicist Hume Feldman of the University of Kansas has detected a similar, but weaker, flow. He said the Kashlinsky team’s study is “very interesting, very intriguing, [but] a lot more work needs to be done.

“It’s suggestive that something’s going on, but what exactly is going on? It basically tells us to investigate,” he said. David Spergel, an astrophysicist at Princeton University, echoed the sentiment. “Until these results are reanalyzed by another group, I have strong doubts about the validity of the conclusions of this paper,” he wrote in an email.

Very interesting stuff and another example of the scientific process of discovery.

Related: More Mysterious Space PhenomenonLaws of Physics May Need a RevisionEverything that we measure is within the Universe