Category Archives: Science

A New Epoch – Anthropocene

Geologists wonder if they should add a new epoch to the geological time scale. They call it the Anthropocene – the epoch when, for the first time in Earth’s history, humans have become a predominant geophysical force. Naming such a new epoch would also recognize that humans now share responsibility with natural forces for the state of our planet’s ecological environment.

Geologists have been using the term informally for at least half a decade. Now members of the Stratigraphy Commission of the Geological Society of London have laid out the case for giving the term official scientific status.

They make a good point I think.

BBC In Our Time Science Podcast Archive

BBC In Our Time Science Podcast Archive including: Plate Tectonics – the day the Earth moved, Genetic Mutation – the error-strewn secrets of life, The Fibonacci Sequence – the numbers in nature, Antimatter – where has it all gone?, Gravitational Waves – a new window on the universe. Great stuff. This is the type of stuff that makes the internet so great. It is wonderful the amount of great science and engineering resources are online.

Water: Supercool and Strange

Supercool, and Strange

As liquids go, water is a radical nonconformist—differing from other liquids in dozens of ways (see the latest count at www.lsbu.ac.uk/water/anmlies). Most famous among water’s peculiarities is its density at low temperatures. While other liquids contract and get denser as they cool toward their freezing points, water stops contracting and starts to expand. That’s why ice floats and frozen pipes burst.
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Water gets even weirder at colder temperatures, where it can exist as a liquid in a supercooled state well below its ordinary freezing point. Recent evidence suggests that supercooled water splits its personality into two distinct phases—another oddity unseen in other liquids. And last year, water surprised scientists yet again, when they found that at –63 degrees Celsius, supercooled water’s weird behavior returns to “normal.”

Rainforests

John Hunter in Costa Rica

Facts about Rainforests by The Nature Conservancy

Covering less than 2 percent of the Earth’s total surface area, the world’s rainforests are home to 50 percent of the Earth’s plants and animals.
Seventy percent of the plants identified by the U.S. National Cancer Institute as useful in the treatment of cancer are found only in rainforests.
Less than one percent of the tropical rainforest species have been analyzed for their medicinal value.
Originally, 6 million square miles of tropical rainforest existed worldwide. But as a result of deforestation, only 2.6 million square miles remain.
At the current rate of tropical forest loss, 5-10 percent of tropical rainforest species will be lost per decade.
Every second, a slice of rainforest the size of a football field is mowed down. That’s 86,400 football fields of rainforest per day, or over 31 million football fields of rainforest each year.

Photo of John Hunter in Costa Rican rain forest, by Justin Hunter.

Boiling Water And Plastic Spikes Bisphenol A Levels

Boiling water spikes bisphenol A levels

Adding boiling water to polycarbonate plastic bottles causes a dramatic spike in the amount of bisphenol A, or BPA, leaching from containers into drinks, according to a U.S. research team.

The finding suggests that parents sterilizing polycarbonate baby bottles by heating them in water or in a microwave may be inadvertently increasing the amount of the estrogen-mimicking chemical leaching from the containers. It also indicates hikers who use the bottles as a thermos to store hot tea or liquids may be doing the same.

The addition of boiling water increased BPA migration rates by up to 55-fold compared with water at room temperature, according to experiments run at the University of Cincinnati.

From Ghost Writing to Ghost Management in Medical Journals

Ghost Management: How Much of the Medical Literature Is Shaped Behind the Scenes by the Pharmaceutical Industry?

As discussed below, a substantial percentage of medical journal articles (in addition to meeting presentations and other forms of publication, which are not the focus here) are ghost managed, allowing the pharmaceutical industry considerable influence on medical research, and making that research a vehicle for marketing.

Ghost writing and honorary authorship are not in and of themselves scientific problems, though they become so when they shape science to meet particular interests [1]. Some honorary authors are senior professors and chairs of departments, who are added to articles because of local academic politics rather than at the request of drug companies [15,16].
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It has been repeatedly and firmly established that pharmaceutical company funding strongly biases published results in favor of the company’s products [17–19]. Ghost management amplifies that bias, because when one set of commercial interests exerts influence at multiple stages of research, writing, and publication, it will shape the resulting article.

This PLoS published essay includes 52 citations of studies in this area.

While they are clear to distinguish drug company influence on authors and other influence, I can see no justification for honorary authorships. Why can’t people just be honest. Is that really too high an expectation for scientists? Academic politics should not trump truth – especially for scientists. I can understand that traditionally claiming authors that were not actually authors has not been uncommon. But what reason is there to be dishonest in this way now? I don’t know of a good reason. Therefore it seems to me this practice should be seen as any other dishonest practice and those interested in finding the truth should stop making dishonest claims of authorship.
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Synthesizing a Genome from Scratch

In the new study, scientists ordered 101 DNA fragments, encompassing the entire Mycoplasma genome, from commercial DNA synthesis companies. These fragments were designed so that each overlapped its neighboring sequence by a small amount; these overlapping stretches stick together, thanks to the chemical properties of DNA. Researchers then bound the fragments piece by piece, eventually generating the full 582,970 base pair Mycoplasma sequence.

Science and Engineering Instructional Webcasts

doFlick offers user-generated educational, technical and instructional videos on science and engineering. Examples include: Simple Circuits – How to do a basic leak test in vacuum systems – Bacteria in the Human Mouth – Transverse Standing Waves – Pulsed Layer Deposition Overview

The site offers a short videos on science and engineering topics (plus some other topics as well). The site fills a niche that is different that any other site I have seen. The videos are largely tips on lab or engineering techniques or edited labs. These are videos that might appear on network TV but they are exactly the type of resource that makes the internet great. Lets build this resource: upload your own webcasts. There is a great advantage to short targeted online videos (compared to full course lectures – which are also great) because the short targeted videos allow for targeted linking specifically to the video content you want to link to.

This is definitely worth adding to your bookmarks. Or you can just bookmark our directory of science and engineering videos.

Plants, Unikonts, Excavates and SARs

image of 4 biology supergroups

The Tree of Life Has Lost a Branch

“The results were pretty astounding. All non-bacterial life on Earth – called eukaryotic life – can now be divided into four main groups instead of the five groups that we have been working with up to now,” says Kamran Shalchian-Tabrizi, an associate professor from the University of Oslo’s Department of Biology
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All life on Earth can be divided into two essentially different life forms—eukaryotes and prokaryotes. The eukaryotes gather their genetic material in a nucleus, while the prokaryotes (bacteria and archaea) have their genetic material floating freely in the cell. Eukaryotic organisms—such as humans—can, as a result of the new findings, be divided into the following four categories:

Plants (green and red algae, and plants)
Opisthokonts (amoebas, fungi, and all animals—including humans)
Excavates (free-living organisms and parasites)
SAR (the new main group, an abbreviation of Stramenophiles, Alveolates, and Rhizaria, the names of some of its members)

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Three billion years ago, there was only bacteria and Archaea. Eukaryotic life, which comprises all multi-celled organisms, developed in the sea—probably between 1.2 and 1.6 billion years ago. It was not before about 500 million years ago that the first creatures crept onto land.

Invest in Science for a Strong Economy

From a consistent voice in favor of scientific investment comes a call to invest in basic scientific research. Craig Barrett, Chairman of the Board at Intel, pens opinion piece – Flagging Economy Needs Science Investments

Legislation in the form of the America Competes Act was passed in the House and Senate in 2007, and it appeared the United States was finally going to move forward after years of neglect to increase investment in math, science and basic research. All parties agreed that our competitiveness in the 21st century was at stake and we needed to act.

So much for political will.

The recent budget deal between Republicans and Democrats effectively flat-funds or cuts funding for key science agencies. Excluding “earmarks,” the Department of Energy funding for fiscal year 2008 is up only 2.6 percent, thus losing ground to inflation. The National Science Foundation is up 2.5 percent, with the same result. The National Institute of Standards and Technology is up 11 percent, however the labs where research happens only get 2.3 percent, again losing ground to inflation.
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What are they thinking? When will they wake up? It may already be too late; but I genuinely think the citizenry of this country wants the United States to compete. If only our elected leaders weren’t holding us back.

It is a shame that the leaders are doing such a bad job. I wrote about their failures recently in the Curious Cat Investing and Economic Blog, Politicians Again Raising Taxes On Your Children. But we keep electing people that think the way to improve the economy is to borrow some more money (and science and engineering investments seem very far down on their lists of what to spend money on) for someone to pay back in the future. So while our leaders are disappointing, society at large is getting what they ask for.
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