Pigs Instead of Pesticides

photos of pigs in an orchard

Apple Farmers Use Pigs Instead of Pesticides [the broken link was removed]

Jim Koan has a 120-acre apple farm in Flushing, MI. Plagued by the Plum Curculio Beetle that lays its eggs in apples and makes the fruit drop too early from trees, Koan could have used frequent sprays of pesticides for years to get rid of the beetles, or he could use pigs. He tried chickens and guineas, but they weren’t hard enough workers and the guineas were taken away by hawks. He contemplated sheep, too, but in the end, hard-working pigs, too big for any hawk or coyote to steal, were the best bet.

Now he has a group of pigs who shuffle through the orchards when the apples infected with beetles start to fall. They eat the apples and the eggs that would have spelled disaster for next year’s crop, and clear the ground and eat weeds in the process. The pigs make short work of an apple orchard, eating every last contaminated apple. Once the pigs have solved the beetle problem, Koan plans to sell them as organic pork.

Very nice. I like the idea of reducing the use of chemicals in general and it is especially nice when the solution shows that one person’s problem is a pig’s food.

via: It’s the Only One We Have [the broken link was removed], where the photo is from also

Wabash Valley, Illinois Earthquakes

USGS on the recent earthquakes occurred in the Wabash Valley Seismic

These earthquakes occurred in the Wabash Valley Seismic zone. The earthquakes in this zone are scattered over a large area of southeastern Illinois and southwest Indiana. The zone had at least eight prehistoric earthquakes over the past 20,000 years with estimated magnitudes ranging from about 6.5 to 7.5, based on geologic evidence. Earthquakes of the size of the recent quake (Mw 5.2) can produce smaller aftershocks over the following days. A few might be large enough to be felt. Typically, earthquakes of this size (Mw 5.2) can cause light damage within a few tens of miles from the epicenter. Central and eastern US earthquakes generally shake areas about 10 times as large as those that occur in California. It is not surprising that this earthquake was felt as far south as Florida.

The Wabash Valley Seismic zone is adjacent to the more seismically active New Madrid seismic zone on the seismic zone’s north and west. The recent earthquake is also within the Illinois basin – Ozark dome region that covers parts of Indiana, Kentucky, Illinois, Missouri, and Arkansas and stretches from Indianapolis and St. Louis to Memphis. Moderately frequent earthquakes occur at irregular intervals throughout the region. The largest historical earthquake in the Illinois Basin region (magnitude 5.4) damaged southern Illinois in 1968. Moderately damaging earthquakes strike somewhere in the region each decade or two, and smaller earthquakes are felt about once or twice a year.

Earthquakes in the central and eastern U.S., although less frequent than in the western U.S., are typically felt over a much broader region. East of the Rockies, an earthquake can be felt over an area as much as ten times larger than a similar magnitude earthquake on the west coast.

Amazing Designs of Life

The More We Know About Genes, the Less We Understand by Carl Zimmer

All living things, ourselves included, turn genes on and off in a similar way, by making switch-like proteins called transcription factors. And as scientists have identified more of these, they’ve discovered something remarkable: They form a chain of command. The job of some transcription factors is to switch others on and off, and they in turn are controlled by other transcription factors. Even a seemingly simple microbe like E. coli has an impressive hierarchy. Just nine genes rule over about half of the 4,000-odd genes in E. coli.

E. coli’s network allows it to respond quickly to the challenges it meets, from starvation to heat to the loss of oxygen. It can rapidly reorganize itself, switching on hundreds of genes and switching off hundreds of others. What makes this network all the more impressive are the feedback loops that keep it from spinning out of control. When one gene switches on, for example, it may make a protein that shuts down the gene that switched it on in the first place.

Yet even as scientists uncover this network, they discover yet another mystery. In the latest issue of Nature, scientists reported an experiment in which they wreaked havoc with E. coli’s network. They randomly added new links between the transcription factors at the top of the microbe’s hierarchy. Now a transcription factor could turn on another one that it never had before. The scientists randomly rewired the network in 598 different ways and then stepped back to see what happened to the bacteria.

You might expect that they all died. After all, if you were to pop open the back of an iPod and start linking its components together in random ways, you’d expect it to crash. But that’s not what happened.

About 95 percent of the rewired bacteria did just fine with their new networks. They went on with their lives, feeding, growing and dividing. Some even performed better than microbes with the original wiring, under some conditions.

Biodegradable Plastic Bags and Bottles

researchers look to make environmentally friendly plastics

Every year, more than 30 billion water bottles are added to America’s landfills, creating a mountainous environmental problem. But if research at Missouri University of Science and Technology is successful, the plastic bottles of the future could literally disappear within four months of being discarded.

The Missouri S&T research team is constructing new breeds of biodegradable and bioavailable plastics in an effort to reduce the tons of plastic waste that ends up in the nation’s landfills each year. Bioavailable plastics contain substances that can be absorbed by living systems during their normal physiological functions.

By combining and modifying a variety of bio-based, oil-based and natural polymers, the team seeks to create optimal blends that can be used to make agricultural films, bottles, biomedical and drug delivery devices, and more.
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As polylactic acid degrades, the material reacts with water to decompose into small molecules, which are then mineralized into water and carbon dioxide.

“In general, the main end products of polymer degradation are water and carbon dioxide,” Shahlari explains. “Polylatic acid has the potential of replacing the regular water bottles, and we anticipate that our research could be incorporated into that field too.

It sure seems like they are saying these would really biodegrade. Plastic bags can photodegrade where they break down into small bits of plastic that might be hard to see but are still toxic that can be eaten by animals, and us. As one would figure – that is not a good thing. The ocean garbage floats are not huge amounts of plastic bags and bottles but instead huge amounts of small and tiny plastic particles. I know using corn based bags has been looked at previously and used.

Medical Study Integrity (or Lack Thereof)

Merck wrote drug studies for doctors

The drug maker Merck drafted dozens of research studies for a best-selling drug, then lined up prestigious doctors to put their names on the reports before publication, according to an article to be published Wednesday in a leading medical journal.

The article, based on documents unearthed in lawsuits over the pain drug Vioxx, provides a rare, detailed look in the industry practice of ghostwriting medical research studies that are then published in academic journals.
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“It almost calls into question all legitimate research that’s been conducted by the pharmaceutical industry with the academic physician,” said Ross, whose article, written with colleagues, was published Wednesday in JAMA, The Journal of the American Medical Association, and posted Tuesday on the journal’s Web site.

Merck acknowledged Tuesday that it sometimes hired outside medical writers to draft research reports before handing them over to the doctors whose names eventually appear on the publication. But the company disputed the article’s conclusion that the authors do little of the actual research or analysis.

It is sad that the integrity of journals and scientists is so weak that they leave them open to such charges. The significant presence of the corrupting influence of too much money leaves doubt in my mind that the best science is the goal. Which is very sad. In, Funding Medical Research, I discussed my concern that universities are acting more like profit motivated organizations than science motivated organizations. I am in favor of profit motivated organization (those getting the micro-financing in this link, for example) but those organization should not be trusted to provide honest and balanced opinions they should be expected to provide biased opinions.

If universities (and scientists branding themselves as … at X university) want to be seen as honest brokers of science they can’t behave as though raising money, getting patents… are their main objectives. Many want to be able to get the money and retain the sense of an organization focused on the pursuit of science above all else. Sorry, you can’t have it both ways. You can, and probably should, try stake out some ground in the middle. And for me right now, partially because they fail to acknowledge the extent to which money seems to drive decisions I don’t believe they are trying to be open and honest, instead I get the impression they are leaning more toward trying to market and sell.
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The Last Lecture Book

We wrote about this last August: CMU Professor Gives His Last Lesson on Life. If you haven’t seen the lecture I encourage you to do so now. Now there is a book by Dr. Randy Pausch called The Last Lecture where he expands on his lecture with “many more stories from my life and the attendant lessons I hope my kids can take from them.”

Like any teacher, my students are my biggest professional legacy. I’d like to think that the people I’ve crossed paths with have learned something from me, and I know I learned a great deal from them, for which I am very grateful. Certainly, I’ve dedicated a lot of my teaching to helping young folks realize how they need to be able to work with other people–especially other people who are very different from themselves.

Is Computer Science a Science?

Is computer science a science?

Most people seem to apply a certain litmus test of sorts to determine if something is a science. Something is a science if

(1) it uses the scientific method (i.e., empirical research and observation)
(2) it involves studying “fundamental principles” of the natural or physical world

(1) is, I think, a bit easier to address. I use the scientific method all the time in my work: I form hypotheses about how a particular system or algorithm should behave, develop experiments to test the hypothesis, gather data, analyze, etc. Several commenters to the first post in the series discuss the same thing. Joe, for instance, says this about his work: “One of the things I’ve noticed as a developer/engineer for the last 20 years is that I use the techniques of science all the time, only I’m not studying “nature” (be it the physics world, chemicals, biology, or people). I’m applying the disciplines and the scientific process to stuff that other people have done.” (I’ll get back to this point in a minute.)

Turtle Camps in Malaysia

Drawing of sea turtles

Pelf Nyok has posted drawing of turtle camps students that she taught in Malaysia. On the image shown on the left:

The third poster shows the threats that our turtles are facing — a turtle is trapped in a fisherman’s net, a turtle is consuming a plastic bag, which it mistakes as a jellyfish, and there are rubbish on the sea floor.

Pelf is on her way to the USA for turtle conservation training on the Asian Scholarship Program for in-situ Chelonian Conservation:

a 4-month scholarship, and involves professional training in the conservation of turtles (including sea turtles, freshwater turtles and tortoises, I presume). The flow of the program has yet to be finalized but according to the Director of the Program, we (the Laotian student and I) would be spending one month visiting turtle scientists and turtle research centers in New Jersey, Tennessee, Florida and maybe California.

And the remaining 3 months would be spent at the Wetlands Institute at Stone Harbor, New Jersey. The training will be conducted at the Wetlands Institute, together with other local participants.

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Bikini Atoll 50 Years Later

Nuked coral reef bounces back

Three islands of Bikini Atoll were vapourised by the Bravo hydrogen bomb in 1954, which shook islands 200 kilometres away. Instead of finding a bare underwater moonscape, ecologists who have dived it have given the 2-kilometre-wide crater a clean bill of health.

“It was fascinating – I’ve never seen corals growing like trees outside of the Marshall Islands,” says Zoe Richards of the ARC Centre of Excellence for Coral Reef Studies in Australia. Richards and colleagues report a thriving ecosystem of 183 species of coral, some of which were 8 metres high. They estimate that the diversity of species represents about 65% of what was present before the atomic tests. The ecologists think the nearby Rongelap Atoll is seeding the Bikini Atoll, and the lack of human disturbance is helping its recovery.
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“When I put the Geiger counter near a coconut, which accumulates radioactive material from the soil, it went berserk,” says Beger.

ASU Science Studio Podcasts

Science Studio offers podcasts by the Arizona State University School of Life Sciences with professors discussing science; it is another excellent source of science podcasts. Podcasts include:

Of Whales, Fish and Men: Managing Marine Reserves – With 90% of the world’s fisheries in a state of collapse, the questions around establishing marine reserves, monitoring, and species/stock recovery take on critical dimensions. But how do decision-makers, stakeholders, and the public formulate effective conservation policies; ones right for their community?
Biology on Fire – Regents’ Professor, Mac Arthur Fellow, author and a world’s expert on fire and fire ecology Stephen Pyne talks about how fire, its use, misuse, and its biological nature have shaped our world, before and because of man, and learn how policies of the past still reverberate in our present, in Arizona and globally.
Giant Insects: Not just in B movies – Professor Jon Harrison sheds light on the evolution of his scientific career and nature’s biggest order: arthropods. How big is big? In the Paleozoic, cockroaches were the size of housecats and dragonflies the size of raptors.
Special Feature: Building a science career – One of the most highly cited ecologists in the world, Jane Lubchenco trod her own unique path to success. In this live recording with the Association for Women in Science, she explains how assertiveness, the art of negotiation, and knowing the currency for promotion and tenure can make the difference between achieving balance between family and career and dropping out the leaky academic pipeline that leads to advancement.

These podcasts are great way to use the internet to serve the mission of universities: to educate. And a great way to promote science.