Tag Archives: cool

Curious Platypus Genome is No Surprise

Platypus Genome Found Fittingly Strange by Rick Weiss

a team of scientists has determined the platypus’s entire genetic code. And right down to its DNA, it turns out, the animal continues to strain credulity, bearing genetic modules that are in turn mammalian, reptilian and avian.

There are genes for egg laying — evidence of its reptilian roots. Genes for making milk, which the platypus does in mammalian style despite not having nipples. Genes for making snake venom, which the animal stores in its legs. And there are five times as many sex-determining chromosomes as scientists know what to do with.

“It’s such a wacky organism,” said Richard Wilson, director of the Genome Sequencing Center at Washington University in St. Louis, who with colleague Wesley Warren led the two-year effort, described today in the journal Nature.

Yet in its wackiness, Wilson said, the platypus genome offers an unprecedented glimpse of how evolution made its first stabs at producing mammals. It tells the tale of how early mammals learned to nurse their young; how they matched poisonous snakes at their venomous game; and how they struggled to build a system of fertilization and gestation that would eventually, through relatives that took a different tack, give rise to the first humans.

“As we learn more about things like platypuses,” Wilson said, “we also learn more about ourselves and where we came from and how we work.”

Very cool stuff. Related: Platypus genome explains animal’s peculiar features; holds clues to evolution of mammals – Platypus genome mapping boon for human and livestock researchers – Platypus genetic code unravelled – Weird Creatures – Evolution is Fundamental to Science – Long-Eared Jerboa – Cat Joins Exclusive Genome Club – Your Inner Fish

Orangutan Attempts to Hunt Fish with Spear

photo of orangutan attempting spear fishing

Orangutan attempts to hunt fish with spear:

A male orangutan, clinging precariously to overhanging branches, flails the water with a pole, trying desperately to spear a passing fish. It is the first time one has been seen using a tool to hunt. The extraordinary image, a world exclusive, was taken in Borneo on the island of Kaja, where apes are rehabilitated into the wild
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This individual had seen locals fishing with spears on the Gohong River. Although the method required too much skill for him to master, he was later able to improvise by using the pole to catch fish already trapped in the locals’ fishing lines.

Cool. The photos is from a new book on orangutans, The Thinkers Of The Jungle, which also includes the first photograph of an orangutan swimming.

Viruses Eating Bacteria

All the World’s a Phage by John Travis:

“Believe it or not, nobody had looked before,” says Suttle. “On average, there are 50 million viruses per milliliter in seawater. The question is, What the heck they’re doing there?” Microbiologists then documented similar, and even higher, concentrations of phages in soil samples. This led to estimates of 10³¹ bacteriophages worldwide, a staggeringly large number that many scientists initially dismissed. “We can’t wrap our brains around it,” says Pedulla. “If phages were the size of a beetle, they would cover the Earth and be many miles deep.”
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According to estimates put forth by Suttle, phages destroy up to 40 percent of the bacteria in Earth’s oceans each day.
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The students collected soil from barnyards, gardens, and even the monkey pit at the Bronx Zoo. The scientists then taught the students how to isolate a bacteriophage from the soil by growing the viruses in Mycobacterium smegmatis, a harmless bacterial relative of the microbe that causes tuberculosis. “We guarantee them that the bacteriophage they find will never have been discovered before. We know that because the diversity is so high, and we’ve never isolated the same bacteriophage twice,” says Hatfull.

In the April 18 Cell, Hatfull and his professional and teenage collaborators describe the genomes of 10 soil-dwelling bacteriophages that they had isolated. Of the more than 1,600 genes that the team identified, about half are novel, that is, they don’t match any previously described genes in any other organism.

Science is full of amazing new frontiers. Some other amazing stuff: Thinking Slime Moulds – Tracking the Ecosystem Within Us – Retroviruses – Energy Efficiency of Digestion – One Species’ DNA Discovered Inside Another’s

The Last Lecture Book

We wrote about this last August: CMU Professor Gives His Last Lesson on Life. If you haven’t seen the lecture I encourage you to do so now. Now there is a book by Dr. Randy Pausch called The Last Lecture where he expands on his lecture with “many more stories from my life and the attendant lessons I hope my kids can take from them.”

Like any teacher, my students are my biggest professional legacy. I’d like to think that the people I’ve crossed paths with have learned something from me, and I know I learned a great deal from them, for which I am very grateful. Certainly, I’ve dedicated a lot of my teaching to helping young folks realize how they need to be able to work with other people–especially other people who are very different from themselves.

Turtle Camps in Malaysia

Drawing of sea turtles

Pelf Nyok has posted drawing of turtle camps students that she taught in Malaysia. On the image shown on the left:

The third poster shows the threats that our turtles are facing — a turtle is trapped in a fisherman’s net, a turtle is consuming a plastic bag, which it mistakes as a jellyfish, and there are rubbish on the sea floor.

Pelf is on her way to the USA for turtle conservation training on the Asian Scholarship Program for in-situ Chelonian Conservation:

a 4-month scholarship, and involves professional training in the conservation of turtles (including sea turtles, freshwater turtles and tortoises, I presume). The flow of the program has yet to be finalized but according to the Director of the Program, we (the Laotian student and I) would be spending one month visiting turtle scientists and turtle research centers in New Jersey, Tennessee, Florida and maybe California.

And the remaining 3 months would be spent at the Wetlands Institute at Stone Harbor, New Jersey. The training will be conducted at the Wetlands Institute, together with other local participants.

Continue reading →

Babbage Difference Engine In Lego

Building A Calculating Machine Using Lego Pieces by Andrew Carol

Before the day of computers and pocket calculators all mathematics was done by hand. Great effort was expended to compose trigonometric and logarithmic tables for navigation, scientific investigation, and engineering purposes. The larger efforts involved rooms of semi skilled people, called ‘computers’, capable of doing reliable arithmetic who would be under the direction of a skilled mathematician.

In the mid-19th century, people began to design machines to automate this error prone process. Many machines of various designs were eventually built but, the most advanced and famous of these was not. The Babbage Difference Engine.

Because of engineering issues as well as political and personal conflict the Babbage Difference engines construction had to wait until 1991 when the Science Museum in London decided to build the Babbage Difference Engine No.2 for an exhibit on the history of computers.

Babbage’s design could evaluate 7th order polynomials to 31 digits of accuracy. I set out to build a working Difference Engine using standard LEGO parts which could compute 2nd or 3rd order polynomials to 3 or 4 digits. I have built two generations of Difference Engines and am designing the third version now.

Photos by Fritz the Cat

Fritz the cat - photographer

fritz-cam by Fritz the cat:

My name is Fritz [photo of me on the left] and I live at 23 Cat Street [in Germany]. My mistress is an artist, and now it’s my turn to show what I can do. Since September 2007 we’ve owned a Mr-Lee-Catcam
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Third time lucky. I went for a long walk with the camera. Perhaps a bit too long, because she was looking for me everywhere. Anyway, she was very pleased when I came home with the camera and a mouse. I’d taken over 200 photos while I was out. Unfortunately the battery gave up the ghost before the final capture … of the mouse, I mean.

See many more great photos by fritz at fritz-cam.

Dino-Era Feathers Found Encased in Amber

Seven dino-era feathers found perfectly preserved in amber in western France highlight a crucial stage in feather evolution, scientists report. The hundred-million-year-old plumage has features of both feather-like fibers found with some two-legged dinosaurs known as theropods and of modern bird feathers, the researchers said.
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The find provides a clear example “of the passage between primitive filamentous down and a modern feather,” said team member Didier NÃ©raudeau of the University of Rennes in France. The study team isn’t sure yet whether the feathers belonged to a dino or a bird. But fossil teeth from two dino families thought to have been feathered were excavated from rocks just above the layer that contained the amber, Perrichot said. “It is entirely plausible that the feathers come from a dinosaur rather than from a bird,” he said.

Phun Physics

Coolest science toy ever

Phun is without question the greatest computer toy in the history of the universe, if this had been around when I was a kid I would be a frickin genius by now. You don’t need things any more. It’s extremely easy to use. As a starter tip, turn gravity off when you’re attaching stuff to the background (right click after selecting “affix” tool).

Very cool. Get your Phun (2D physics software) for free. Phun is a Master of Science Theises by Computing Science student Emil Ernerfeldt.

Some other very cool stuff: Cool Mechanical Simulation System – Scratch from MIT – What Kids can Learn – Lego Autopilot First Flight – Awesome Cat Cam

Home Engineering: Physical Gmail Notifier

photo of Gmail Cube

How to make a Physical Gmail Notifier

Every so often, the computer checks for new emails in your Gmail account, and then tells the electronics board whether any have arrived. If they have, the board turns on the output device (the cube). Simple.

The hardware itself is the popular Arduino board, the tinkerer’s dream device. I’m actually using a Boarduino, but any variant should work (subject to a small but important detail, see below). This might be particularly interesting with a Bluetooth Arduino..

The Arduino talks with your computer over a serial connection, which runs over the normal USB cable you use to communicate with your Arduino.

What is Arduino?: Arduino is an open-source electronics prototyping platform based on flexible, easy-to-use hardware and software. It’s intended for artists, designers, hobbyists, and anyone interested in creating interactive objects or environments. Arduino can sense the environment by receiving input from a variety of sensors and can affect its surroundings by controlling lights, motors, and other actuators.