Tag Archives: science webcasts

Fold.it – the Protein Folding Game

Foldit is a revolutionary new computer game enabling you to contribute to important scientific research. This is another awesome combination of technology, distributed problem solving, science education…

Essentially the game works by allowing the person to make some decisions then the computer runs through some processes to determine the result of those decisions. It seems the human insight of what might work provides an advantage to computers trying to calculate solutions on their own. Then the results are compared to the other individuals working on the same protein folding problem and the efforts are ranked.

This level of interaction is very cool. SETI@home, Rosetta@home and the like are useful tools to tap the computing resources of millions on the internet. But the use of human expertise really makes fold.it special. And you can’t help but learn by playing. In addition, if you are successful you can gain some scientific credit for your participation in new discoveries.

Related: Expert Foldit Protein Folder, JSnyderResearchers Launch Online Protein Folding GameNew Approach Builds Better Proteins Inside a ComputerPhun PhysicsProtein Knots

The site includes some excellent educational material on proteins and related material. What is a protein:

Proteins are the workhorses in every cell of every living thing. Your body is made up of trillions of cells, of all different kinds: muscle cells, brain cells, blood cells, and more. Inside those cells, proteins are allowing your body to do what it does: break down food to power your muscles, send signals through your brain that control the body, and transport nutrients through your blood. Proteins come in thousands of different varieties, but they all have a lot in common. For instance, they’re made of the same stuff: every protein consists of a long chain of joined-together amino acids.

structure specifies the function of the protein. For example, a protein that breaks down glucose so the cell can use the energy stored in the sugar will have a shape that recognizes the glucose and binds to it (like a lock and key) and chemically reactive amino acids that will react with the glucose and break it down to release the energy.

Proteins are involved in almost all of the processes going on inside your body: they break down food to power your muscles, send signals through your brain that control the body, and transport nutrients through your blood. Many proteins act as enzymes, meaning they catalyze (speed up) chemical reactions that wouldn’t take place otherwise. But other proteins power muscle contractions, or act as chemical messages inside the body, or hundreds of other things.

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UC-Berkeley Course Videos now on YouTube

About a year ago I posted that UC-Berkeley Course Videos were available on Google Video. Well now the
Berkeley YouTube site includes even more videos of Berkeley lectures. They include those listed on Google Video that I mentioned last year such as Physics for Future Presidents and Search Engines (by Sergey Brin) and more.

They currently have 201 videos posted. Hopefully they will add many more.

Does anyone else have the annoying delay on pages with YouTube videos? My entire browser locks up for probably 15 seconds on average now for any page that has an embedded YouTube video (not always but very often now). I find this very annoying.

Related: Science and Engineering Webcast DirectoryMore Great Webcasts: Nanotech and moreGoogle Technology Talks

YouTube+ for Science from PLoS

SciVee is a new site by the great people at PLoS, with support from NSF and San Diego Supercomputer Center. It is very early in the launch of this effort but it looks very promising.

SciVee allows scientists to communicate their work as a multimedia presentation incorporated with the content of their published article. Other scientists can freely view uploaded presentations and engage in virtual discussions with the author and other viewers. SciVee also facilitates the creation of communities around specific articles and keywords. Use this medium to meet peers and future collaborators that share your particular research interests.

Of course plenty of great videos are already online but this looks like another great effort at helping improve communication of scientific ideas by the Public Library of Science. And there are advantages to a community lead by scientists that not only posts videos but encourages scientific discussion on the related matters. I am hopeful (and confident) this will become a great resource.

Related: Science and Engineering Webcast DirectoryStanford Linear Accelerator Center Public LecturesGoogle Engineering and Technology Webcasts
Originally I posted this to my employers blog: Engineering and…. It turns out it was made public prematurely – SciVee update.

The Inner Life of a Cell – Animation

Animation of the inside of a cell
The Inner Life of a Cell, an eight-minute animation created for Harvard biology students… illustrates unseen molecular mechanisms and the ones they trigger, specifically how white blood cells sense and respond to their surroundings and external stimuli.

The online video is beautiful, see – Cellular Visions: The Inner Life of a Cell. Update: Unfortunately the webcast links on that page are not working but you can see a longer version than was available via: Inner Life of a Cell – Full Version.
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Berkeley and MIT courses online

Huge amount of University of California Berkely webcasts of course lectures. Subscribe to RSS feeds and listen to podcasts or listen online.

Courses include: General Biology, Solid State Devices and Introductory Physics. Course websites include handouts for the lectures.

A great open access resource.

I can’t believe I have mentioned MIT open courseware before but a search didn’t find anything. MIT’s effort is an excellent resource, many on science and engineering: Brain and Cognitive Sciences, Materials Science and Engineering, etc..

MIT also includes the excellent: Visualizing Cultures – a gateway to seeing history through images that once had wide circulation among peoples of different times and places by John Dower (author of National Book Award and Pulitzer Prize winning: Embracing Defeat: Japan in the Wake of World War II) and Shigeru Miyagawa.