Tag Archives: Science

Great Webcast Explaining the Digestive Systems

You will learn things like why it is so important to chew your food well (increase the surface area for enzymes to get at the food). Our bodies also have adapted to provide a huge surface area for the digestive system to work; the small intestine alone has a surface area of 250 square meters (larger than the size of most apartments). Your small intestine is 4.5 to 10.5 meters long.

Virus Kills Breast Cancer Cells in Laboratory

Some very exciting and good news from Penn State. Researchers have found a virus that kills breast cancer cells. It is great to read about research breakthroughs like this. Of course, most of these announcements never become practical solutions, unfortunately. And if they do it is many many years later and almost always in much less exciting ways than the headlines. Still, the percentage that do make it through the process into workable solutions provide us great benefits.

Virus kills breast cancer cells in laboratory

Adeno-associated virus type 2 (AAV2) is a virus that regularly infects humans but causes no disease. Past studies by the same researchers show that it promotes tumor cell death in cervical cancer cells infected with human papillomavirus. Researchers used an unaltered, naturally occurring version of AAV2 on human breast cancer cells.

“Breast cancer is the most prevalent cancer in the world and is the leading cause of cancer-related death in women,” said Samina Alam, research associate in microbiology and immunology. “It is also complex to treat.”
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“We can see the virus is killing the cancer cells, but how is it doing it?” Alam said. “If we can determine which viral genes are being used, we may be able to introduce those genes into a therapeutic. If we can determine which pathways the virus is triggering, we can then screen new drugs that target those pathways. Or we may simply be able to use the virus itself.”
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AAV2 does not affect healthy cells. However, if AAV2 were used in humans, the potential exists that the body’s immune system would fight to remove it from the body. Therefore, by learning how AAV2 targets the death pathways, researchers potentially can find ways to treat the cancer without using the actual virus.

In ongoing studies, the Penn State researchers also have shown AAV2 can kill cells derived from prostate cancer, mesothelioma, squamous cell carcinoma, and melanoma. A fourth line of breast cancer cells — representing the most aggressive form of the disease — also was studied in a mouse breast tumor model, followed by treatment with AAV2. Preliminary results show the destruction of the tumors in the mice, and researchers will report the findings of those mouse studies soon.

The fight against cancer has many promising breakthroughs. We have made some great progress. Still the fight is extremely difficult and we have many more frustrations than successes.

Scientific Illiteracy Leads to Failure to Vaccinate Which Leads to Death

Anti-vaccination propagandists help create the worst whooping cough epidemic in 70 years by Steven Salzberg is a professor at Johns Hopkins School of Medicine:

When the vaccination rates drop, everyone becomes more vulnerable to infectious diseases. When more than 90% of the population is vaccinated, we have “herd immunity” – this means the disease can’t spread because there aren’t enough susceptible people in the community. So the high rate of vaccine refusal in Washington makes it easier for whooping cough (and other diseases) to spread.
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And now we learn that the U.S. is in the midst of the worst whooping cough epidemic in 70 years. One of the most hard-hit states is Washington, which the CDC just announced (on 20 July) has suffered 2,520 cases so far this year, a 1300% increase over last year. This is the highest number of cases reported in Washington since 1942.
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The U.S. has had over 17,000 cases this year, putting it on track for the worst year since 1959. The highest rate of infection in the nation is in Wisconsin (which has also been hit hard by anti-vaccine effects), followed by Washington and Montana. 10 deaths have been reported, mostly in infants who were too young to be vaccinated. For all this, we can thank the anti-vaccination movement.

The failure of our society to appreciate the value of science has dire consequences. We are lucky to benefit from the results of scientific advances around us everyday. Some people, instead of appreciating the value of science waste these great gifts we have been given.

What people want to believe is up to them. When people’s actions risk others lives that is not ok. Drunk drivers risk others lives; therefore we don’t allow drunk driving. Society requires that people respect others right to live. It is sensible to require people to cooperate to limit damaging behavior: such as drunk driving or not being properly vaccinated.

Pertussis (whooping cough) is a highly contagious bacterial disease that causes uncontrollable, violent coughing. The coughing can make it hard to breathe. Pertussis, or whooping cough, is an upper respiratory infection caused by the Bordetella pertussis or Bordetella parapertussis bacteria. It is a serious disease that can cause permanent disability in infants, and even death.

High School Student Creates: Test That is Much More Accurate and 26,000 Times Cheaper Than Existing Pancreatic Cancer Tests

Seeing what these kids come up with is so refreshing after being so disappointed by the actions fo our leaders (politicians, business leaders, financiers, law enforcement [spying on citizens because they feel electronic privacy is fine to invade, taking away liberty…], health care in the USA [twice as expensive as elsewhere with no better results, 10 of millions without coverage]…). These kids make me feel hopeful, unfortunately the actions of the powerful leave me less hopeful.

Jack Andraka created a new paper based test for diagnosing pancreatic cancer that is 50% more accurate, 400 times more sensitive, and 26,000 times less expensive than existing methods. His method uses carbon nanotubes and can catch the disease in very early stages which is critical to treatment success. The test also covers other forms of cancer very effectively (he concentrated on the results for pancreatic cancer given the low survival rates for that cancer). Jack Andraka: “I actually love single-walled carbon nanotubes; they’re like the superheroes of material science.”

His results are great. Often initial results can be difficult to actually turn into such positive results in the real world. But this is a great step and it is great to see what young minds can do. The claims for how much better, cheaper etc. are wildly different in various places on the International Science and Engineering Fair (ISEF) site.

Jack Andraka was awarded $75,000 for his development of a new method to detect pancreatic cancer as the winner of the top prize at the Intel ISEF (I believe it is new this year to call the winner the Gordon E. Moore Award).

A Novel Paper Sensor for the Detection of Pancreatic Cancer by Jack Andraka
North County High School, Glen Burnie, MD

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Citizen Science: Use Your Smart Phone to Help Scientists

10 Ways You Can Use Your Smartphone to Advance Science by Matt Soniak

Scientists have started to use the abilities and prevalence of smartphones to their advantage, creating apps specifically for their studies and crowdsourcing observation and data collection. When almost everyone has an Internet connection, a camera, and a GPS unit right in their phone, almost anyone can gather, organize, and submit data to help move a study along.
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The Indicator Bats Program (iBats), a joint project of the Zoological Society of London’s Institute of Zoology and The Bat Conservation Trust, got its start with a couple of researchers working in Transylvania (of course) in 2006. The idea of the project is to identify and monitor bat populations around the world by the ultrasonic echo-location calls they use to navigate and find prey.
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The goal of Project NOAH (Networked Organisms and Habitats) is pretty ambitious: “build the go-to platform for documenting all the world’s organisms.” Their app has two modes. “Spottings” lets you take photos of plants and animals you see, categorize and describe them and then submit the data for viewing on NOAH’s website and use by researchers for population and distribution studies.
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Invasive plants and animals can crowd out natives, compete with them for food sources and alter the fire ecology of an ecosystem, disrupting its natural balance. Researchers and programmers from UCLA, the Santa Monica Mountains National Recreation Area and the University of Georgia have teamed up to create the What’s Invasive citizen science program and smartphone app. Volunteers can use the app to look up lists of the top invasive species in their area, created by National Park Service rangers and biologists. If they spot a plant or animal from the list, they submit a geo-tagged observation, with optional picture and text notes, so that scientists can locate, identify, study try to remove the species.

Great stuff.

Our Dangerous Antibiotic Practices Carry Great Risks

Our continued poor antibiotics practices increase the risk of many deaths. We are very poor at reacting to bad practices that will kill many people in the future. If those increased deaths happened today it is much more likely we would act. But as it is we are condemning many to have greatly increased odds of dying from bacterial causes that could be prevented if we were more sensible.

Resistance to antibiotics is becoming a crisis

Increasingly, microbes are becoming untreatable. Margaret Chan, director general of the World Health Organization, warned in March of a dystopian future without these drugs. “A post-antibiotic era means, in effect, an end to modern medicine as we know it,” she said. “Things as common as strep throat or a child’s scratched knee could once again kill.”
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evidence is mounting that antibiotics are losing efficacy. Through the relentless process of evolution, pathogens are evading the drugs, a problem known broadly as antimicrobial resistance.
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Europe has launched a $741 million, seven-year, public-private collaborative research effort to accelerate drug development.

Seeking new antibiotics is wise but the commentary completely ignores our bad practices that are causing the problem to be much worse than it would be if we acted as though bad practices that will lead to many deaths should be avoided.

Previous posts about practices we taking that create great risk for increased deaths: Antibiotics Too Often Prescribed for Sinus Woes (2007) – Meat Raised Without Antibiotics is Sadly Rare Today (2007) – Overuse of Antibiotics (2005) – CDC Urges Increased Effort to Reduce Drug-Resistant Infections (2006) – FDA May Make Decision That Will Speed Antibiotic Drug Resistance (2007) – Antibacterial Soaps are Bad (2007) – Waste Treatment Plants Result in Super Bacteria (2009) – Antibiotics Breed Superbugs Faster Than Expected (2010) – Antibiotics Use in Farming Can Create Superbugs (2010) – What Happens If the Overuse of Antibiotics Leads to Them No Longer Working? (2011) – Dangerous Drug-Resistant Strains of TB are a Growing Threat (2012)

Obviously bacteria evolve to survive the counter measures we currently have. The foolish practices of promoting ignorance of evolution leads to a society where the consequences of actions, and the presence of evolution, lead to bad consequences. We find ourselves in that society.

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Science PhD Job Market in 2012

The too-big-to-fail-bank crisis continues to produce huge economic pain throughout the economy. Science PhDs are not immune, though they are faring much better than others.

U.S. pushes for more scientists, but the jobs aren’t there

Since 2000, U.S. drug firms have slashed 300,000 jobs, according to an analysis by consulting firm Challenger, Gray & Christmas. In the latest closure, Roche last month announced it is shuttering its storied Nutley, N.J., campus — where Valium was invented — and shedding another 1,000 research jobs.
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Largely because of drug industry cuts, the unemployment rate among chemists now stands at its highest mark in 40 years, at 4.6 percent, according to the American Chemical Society, which has 164,000 members. For young chemists, the picture is much worse. Just 38 percent of new PhD chemists were employed in 2011, according to a recent ACS survey.
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Two groups seem to be doing better than other scientists: physicists and physicians. The unemployment rate among those two groups hovers around 1 to 2 percent, according to surveys from NSF and other groups. Physicists end up working in many technical fields — and some go to Wall Street — while the demand for doctors continues to climb as the U.S. population grows and ages.

But for the much larger pool of biologists and chemists, “It’s a particularly difficult time right now,” Stephan said.
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From 1998 to 2003, the budget of the National Institutes of Health doubled to $30 billion per year. That boost — much of which flows to universities — drew in new, young scientists. The number of new PhDs in the medical and life sciences boomed, nearly doubling from 2003 to 2007, according to the NSF.

The current overall USA unemployment rate is 8.2%.

The current economy doesn’t provide for nearly guaranteed success. The 1960’s, in the USA, might have come close; but that was a very rare situation where the richest country ever was at the prime of economic might (and even added on top of that science was seen as key to promote continued economic success). Today, like everyone else (except trust fund babies), scientists and engineers have to make their way in the difficult economy: and that should be expected to be the case in the coming decades.

Right now, physicians continue to do very well but the huge problems in the USA health system (we pay double what other rich countries do for not better outcomes) make that a far from a certain career. They likely will continue to do very well, financially, just not as well as they have been used to.

Science and engineering education prepare people well for economic success but it is not sufficient to guarantee the easy life. Just like everyone else, the ability to adapt to current market conditions is important in the current economic climate – and will likely continue to be hugely important going forward.

The reason to get a undergraduate or graduate science or engineering education is because you are interested in science and engineering. The economic prospects are likely to continue to be above average (compared to other education choices) but those choosing this path should do so because they are interested. It makes sense to me to factor in how your economic prospects will be influenced by your choices but no matter what choices are made a career is going to take hard work and likely many frustrations and obstacles. But hopefully a career will provide much more joy than hardship.

Wonderful Views of Life Using Micro-photography

The Olympus BioScapes 2011 Winners Gallery is full of great photos and videos of micro bioscapes.

Floschularia Ringerns Rotifer feeding by Charles Crebs

Winning photo by Mr. Charles Krebs, Issaquah, Washington, USA
Specimen: Rotifer Floscularia ringens feeding. Its rapidly beating cilia (hair-like structures) bring water containing food to the rotifer
Technique: Differential interference contrast microscopy

The photo shows the microscopic animal’s self-made reddish tube-shaped home, with a building block in the process of being formed inside the rotifer’s body.

Using Robots to Collect Data on our Oceans

Interesting idea to use self propelled robots to provide data on the oceans. They use no fuel to move, they use wave energy. They also have solar panels on the top. The wave gliders can travel to a distant area, collect data, and return to base. One of the big problems with convention methods of collecting data on the oceans is the large costs of placing the buoys (and the cost of servicing them).

One Scientists 20 Year Effort to Defeat Dengue Fever

As I have said many times scientific breakthroughs often follow many years of effort. Here is a great example of a scientist putting in great work for years and it looks like it is about to payoff for hundreds of millions of people.

A Scientist’s 20-Year Quest To Defeat Dengue Fever

Now as I said, Scott’s been pushing this idea of using Wolbachia to control dengue for decades, for a most of that time without any success. I asked Scott what it takes to stick with something for that long.

“I think being obsessive,” he replied. “Being maybe a little ill in that regard. And it’s just that I seem to have focused my obsession onto Wolbachia instead of on to postage stamps or model trains.”

And even though his obsession has brought him to the point where he’s shown he can get his Wolbachia-infected mosquitoes to spread in the wild, that’s not the success he’s ultimately after. “Success for me is having a significant impact on dengue disease in communities,” he says.

To do that, he’ll have to release his mosquitoes in a place where there’s a lot of dengue, and then see if that brings down the number of cases of the disease in humans. Those studies are being planned now.

The stakes are high. By some estimates, more than a billion people around the world are at risk for getting dengue. Even if it doesn’t kill you, I’m told a case of dengue can make you feel so bad, wish you were dead.
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But Scott says it’s not yet time to celebrate.

“We’ve got some good preliminary data, and we’re on the path. And it’s looking good. But you know I am a realist. It could fall over at any day,” says Scott.