Tag Archives: Science

Researchers Work to Protect Bats Against Deadly Disease

Researchers work to protect Wisconsin bats against deadly disease

Redell, who studies bats for the Department of Natural Resources, lives every day now with the threat of a disease called white-nose syndrome hanging over his head. The disease, though not yet in Wisconsin, has killed more than 90 percent of the cave bats in Eastern states such as New York and Vermont. Experts predict it could make its way to Wisconsin, with its eight species and hundreds of thousands of bats, in as little as two years.
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One female little brown bat – with a body less than the length of your thumb – can eat its body weight in insects in one evening, Redell said. Such is the insect-hunting prowess of the bats that they are thought to save farmers billions of dollars in crop losses, according to Sheryl L. Ducummon, with Bat Conservation International.

In a recent scientific article on the ecological and economic importance of bats, Ducummon reported that, in one summer, the 150 bats in an average colony of big brown bats can conservatively eat 38,000 cucumber beetles, which attack corn and other farm crops. Damage from the beetle and their larvae cost corn farmers as much as $1 billion a year.

The loss of such an insect-eating force could be devastating, Redell said. The approximate 1 million bats that have already died of white-nose syndrome in the last three years on the East Coast would have eaten 700,000 tons of insects were they still hunting the night skies, he said.

Bats perform other important tasks, too. Several Western species serve crucial roles as pollinators for desert plants such as agave and as seed dispersers for dozens of species of cacti.
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“I mean, this is like a mouse that flies, but it has the predatory capabilities of a polar bear,” Blehert said. “They are physically adapted to command the night sky. You’re talking about a little thing with a body less than half the size of your thumb whose heartbeat can get up to 1,000 beats a minute when they are flying but that can slow when they are hibernating in the winter to 4 beats a minute. And they live 20 to 25 years!”

Bats really are amazing and very valuable animals.

The Value of Displaying Data Well

Anscombe’s quartet: all four sets are identical when examined statistically, but vary considerably when graphed. Image via Wikipedia.

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Anscombe’s quartet comprises four datasets that have identical simple statistical properties, yet are revealed to be very different when inspected graphically. Each dataset consists of eleven (x,y) points. They were constructed in 1973 by the statistician F.J. Anscombe to demonstrate the importance of graphing data before analyzing it, and of the effect of outliers on the statistical properties of a dataset.

Of course we also have to be careful of drawing incorrect conclusions from visual displays.

For all four datasets:

Property	Value
Mean of each x variable	9.0
Variance of each x variable	10.0
Mean of each y variable	7.5
Variance of each y variable	3.75
Correlation between each x and y variable	0.816
Linear regression line	$y = 3 + 0.5 x$

Edward Tufte uses the quartet to emphasize the importance of looking at one’s data before analyzing it in the first page of the first chapter of his book, The Visual Display of Quantitative Information.

Here Comes Science by They Might Be Giants

They Might Be Giants creates great music and has moved into creating music aimed at kids, of any age, over the last few years. They are releasing a new Album and animated DVD Here Comes Science, is being released tomorrow. Their music is both enjoyable to listen to and educational, something that is often attempted but rarely done as successfully as they do.

The release include the following songs and videos:

1. Science Is Real
2. Meet the Elements
3. I Am a Paleontologist w/Danny Weinkauf
4. The Bloodmobile
5. Electric Car w/Robin Goldwasser
6. My Brother the Ape
7. What Is a Shooting Star?
8. How Many Planets?
9. Why Does the Sun Shine?
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Experimenting Social Network

Social media is definitely a fad filled with lots of ways to waste time. It also does have real value, ways to connect to things people care about and wish to focus on. Reddit is a good site for finding interesting resources online. Sub-reddits are topical areas within Reddit (I have set up management and investing sub-reddits). A new experiment subreddit looks very interesting:

Each experiment will go through a few threads. The first step will be a query for experimental methods. Someone will present a problem or piece of information they want to find out, and then others will suggest methods. Once this is agreed upon, it will be carried out, and a second thread will be posted detailing the method and providing a place to post results via the comments. Then, a third thread can be made to discuss the results. Having more than one thread for every experiment will make things more accessible and easier to sort.

Don’t research ways other people have experimentally determined these things. Submit original ideas to the experimental design thread. Try to come up with a novel way to discover things, but don’t be completely limited by this suggestion. This is chiefly about rediscovery, not repeating someone else’s experiment, but sometimes there’s fun and merit in that as well.

I have joined. You can go to Reddit and join this subreddit to see experiences with experimenting to learn about the world around us.

Atomic Force Microscopy Image of a Molecule

The delicate inner structure of a pentacene molecule imaged with an atomic force microscope. For the first time, scientists achieved a resolution that revealed the chemical structure of a molecule. The hexagonal shapes of the five carbon rings in the pentacene molecule are clearly resolved. Even the positions of the hydrogen atoms around the carbon rings can be deduced from the image. (Pixels correspond to actual data points). Image courtesy of IBM Research – Zurich

IBM scientists have been able to image the “anatomy” — or chemical structure — inside a molecule with unprecedented resolution. “Though not an exact comparison, if you think about how a doctor uses an x-ray to image bones and organs inside the human body, we are using the atomic force microscope to image the atomic structures that are the backbones of individual molecules,” said IBM Researcher Gerhard Meyer. “Scanning probe techniques offer amazing potential for prototyping complex functional structures and for tailoring and studying their electronic and chemical properties on the atomic scale.”

The AFM uses a sharp metal tip to measure the tiny forces between the tip and the sample, such as a molecule, to create an image. In the present experiments, the molecule investigated was pentacene. Pentacene is an oblong organic molecule consisting of 22 carbon atoms and 14 hydrogen atoms measuring 1.4 nanometers in length. The spacing between neighboring carbon atoms is only 0.14 nanometers—roughly 1 million times smaller then the diameter of a grain of sand. In the experimental image, the hexagonal shapes of the five carbon rings as well as the carbon atoms in the molecule are clearly resolved. Even the positions of the hydrogen atoms of the molecule can be deduced from the image.

Read full press release: IBM Scientists First to Image the “Anatomy” of a Molecule
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Physics from Universe to Multiverse

2005 video of Dr. Michio Kaku speaking on BBC on physics from Universe to Multiverse.

Unfortunately BBC leaders decided to hide this from the world and removed the video. Maybe scientists should stop talking to organizations won’t share the output with the world.

HHMI Science Internships

Undergraduate Scholars Live the Scientific Life at Janelia Farm

With Janelia Farm lab heads as their mentors, the students have delved into projects that include identifying the neurons that control feeding behavior in fruit flies, designing better labeling molecules for use with sophisticated microscopy techniques, increasing the longevity of dragonflies, and developing computer programs for automated image analysis. The Janelia environment, they said, provides a unique opportunity to focus intently on research.
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The summer program offers students more than just hands-on experience in the lab – it aims to expose them to a more complete picture of what it is to work and think as a scientist does. An important component of the program is a weekly seminar in which students present their work to one another and field questions. Likewise, scholars are encouraged to attend the campus’s frequent seminars, conferences, and journal clubs, for exposure to research other their own.

For Gloria Wu, who is majoring in biochemistry at the University of California, Berkeley, the interdisciplinary nature of research at Janelia Farm and the diversity of backgrounds among her fellow scholars were important assets. “A lot of students are coming from math or computer science backgrounds, and that really stimulates a lot of discussion between us, so we can see other approaches to solving biological questions. That is something really wonderful about this program,” she said.

Roger Tsien Lecture On Green Florescent Protein

Nobel Laureate Roger Tsien discusses his research on green florescent protein. From the Nobel Prize web site:

n the 1960s, when the Japanese scientist Osamu Shimomura began to study the bioluminescent jelly-fish Aequorea victoria, he had no idea what a scientific revolution it would lead to. Thirty years later, Martin Chalfie used the jellyfish’s green fluorescent protein to help him study life’s smallest building block, the cell.
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when Anton van Leeuwenhoek invented the microscope in the 17th century a new world opened up. Scientists could suddenly see bacteria, sperm and blood cells. Things they previously did not know even existed. This year’s Nobel Prize in Chemistry rewards a similar effect on science. The green fluorescent protein, GFP, has functioned in the past decade as a guiding star for biochemists, biologists, medical scientists and other researchers.
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This is where the third Nobel Prize laureate Roger Tsien makes his entry. His greatest contribution to the GFP revolution was that he extended the researchers’ palette with many new colours that glowed longer and with higher intensity.

To begin with, Tsien charted how the GFP chromophore is formed chemically in the 238-amino-acid-long GFP protein. Researchers had previously shown that three amino acids in position 65–67 react chemically with each other to form the chromosphore. Tsien showed that this chemical reaction requires oxygen and explained how it can happen without the help of other proteins.

With the aid of DNA technology, Tsien took the next step and exchanged various amino acids in different parts of GFP. This led to the protein both absorbing and emitting light in other parts of the spectrum. By experimenting with the amino acid composition, Tsien was able to develop new variants of GFP that shine more strongly and in quite different colours such as cyan, blue and yellow. That is how researchers today can mark different proteins in different colours to see their interactions.

Crows Can Recognize People

Crows can recognize people and remember them for years. Listen to this interesting report from NPR. Researchers alienated a crow, and then were razzed and harassed by its family and neighbors wherever they go.

Dangerous Infinity

In this BBC documentary, Dangerous Knowledge, David Malone looks at four brilliant mathematicians – Georg Cantor, Ludwig Boltzmann, Kurt GÃ¶del and Alan Turing – whose genius has profoundly affected us, but which tragically drove them insane and eventually led to them all committing suicide.

The film begins with Georg Cantor, the great mathematician whose work proved to be the foundation for much of the 20th-century mathematics. He believed he was God’s messenger and was eventually driven insane trying to prove his theories of infinity.

They explore, among other things, varying levels of infinity. With Ludwig Boltzmann they explore challenges to the understanding of physics.